Search results for the GEO ID: GSE45136  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1097812 | GPL570 |
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SCF expanded HSPCs rep1
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HSPCs expanded with SCF
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isolation source: cord blood
cell type: hematopoietic stem- and progenitor cells (HSPCs)
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| Sample_geo_accession | GSM1097812
| | Sample_status | Public on Jun 03 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Jun 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 1x10^5 sorted CB-derived CD34+ cells were cultured for 18 hours in either SCF alone, or SCF in combination with TPO and CCL28, respectively.
| | Sample_growth_protocol_ch1 | HSPCs were cultured in Serum-Free Expansion Medium (StemCell Technologies) supplemented with stem cell factor.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cell lysates were processed through QIAshredder columns (Qiagen) and total cellular RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was amplified using the NuGen FFPE amplification kit (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were biotin labelled using Affymetrix protocols
| | Sample_hyb_protocol | Hybridisation was performed as per Affymetrix protocols
| | Sample_scan_protocol | Scanning was performed as per Affymetrix protocols
| | Sample_data_processing | Data were dChip summarised.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shamit,,Soneji
| | Sample_contact_email | s.soneji@ucl.ac.uk
| | Sample_contact_department | Biomedicinskt Centrum
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Sölvegatan 19
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097812/suppl/GSM1097812_SCF_1.CEL.gz
| | Sample_series_id | GSE45136
| | Sample_data_row_count | 54675
| | |
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GSM1097813 | GPL570 |
|
SCF expanded HSPCs rep2
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HSPCs expanded with SCF
|
isolation source: cord blood
cell type: hematopoietic stem- and progenitor cells (HSPCs)
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|
| Sample_geo_accession | GSM1097813
| | Sample_status | Public on Jun 03 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Jun 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 1x10^5 sorted CB-derived CD34+ cells were cultured for 18 hours in either SCF alone, or SCF in combination with TPO and CCL28, respectively.
| | Sample_growth_protocol_ch1 | HSPCs were cultured in Serum-Free Expansion Medium (StemCell Technologies) supplemented with stem cell factor.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cell lysates were processed through QIAshredder columns (Qiagen) and total cellular RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was amplified using the NuGen FFPE amplification kit (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were biotin labelled using Affymetrix protocols
| | Sample_hyb_protocol | Hybridisation was performed as per Affymetrix protocols
| | Sample_scan_protocol | Scanning was performed as per Affymetrix protocols
| | Sample_data_processing | Data were dChip summarised.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shamit,,Soneji
| | Sample_contact_email | s.soneji@ucl.ac.uk
| | Sample_contact_department | Biomedicinskt Centrum
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Sölvegatan 19
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097813/suppl/GSM1097813_SCF_2.CEL.gz
| | Sample_series_id | GSE45136
| | Sample_data_row_count | 54675
| | |
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GSM1097814 | GPL570 |
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SCF expanded HSPCs rep3
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HSPCs expanded with SCF
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isolation source: cord blood
cell type: hematopoietic stem- and progenitor cells (HSPCs)
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| Sample_geo_accession | GSM1097814
| | Sample_status | Public on Jun 03 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Jun 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 1x10^5 sorted CB-derived CD34+ cells were cultured for 18 hours in either SCF alone, or SCF in combination with TPO and CCL28, respectively.
| | Sample_growth_protocol_ch1 | HSPCs were cultured in Serum-Free Expansion Medium (StemCell Technologies) supplemented with stem cell factor.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cell lysates were processed through QIAshredder columns (Qiagen) and total cellular RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was amplified using the NuGen FFPE amplification kit (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were biotin labelled using Affymetrix protocols
| | Sample_hyb_protocol | Hybridisation was performed as per Affymetrix protocols
| | Sample_scan_protocol | Scanning was performed as per Affymetrix protocols
| | Sample_data_processing | Data were dChip summarised.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shamit,,Soneji
| | Sample_contact_email | s.soneji@ucl.ac.uk
| | Sample_contact_department | Biomedicinskt Centrum
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Sölvegatan 19
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097814/suppl/GSM1097814_SCF_3.CEL.gz
| | Sample_series_id | GSE45136
| | Sample_data_row_count | 54675
| | |
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GSM1097815 | GPL570 |
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CCL28 expanded HSPCs rep1
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HSPCs expanded with SCF+CCL28
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isolation source: cord blood
cell type: hematopoietic stem- and progenitor cells (HSPCs)
|
|
| Sample_geo_accession | GSM1097815
| | Sample_status | Public on Jun 03 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Jun 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 1x10^5 sorted CB-derived CD34+ cells were cultured for 18 hours in either SCF alone, or SCF in combination with TPO and CCL28, respectively.
| | Sample_growth_protocol_ch1 | HSPCs were cultured in Serum-Free Expansion Medium (StemCell Technologies) supplemented with stem cell factor.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cell lysates were processed through QIAshredder columns (Qiagen) and total cellular RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was amplified using the NuGen FFPE amplification kit (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were biotin labelled using Affymetrix protocols
| | Sample_hyb_protocol | Hybridisation was performed as per Affymetrix protocols
| | Sample_scan_protocol | Scanning was performed as per Affymetrix protocols
| | Sample_data_processing | Data were dChip summarised.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shamit,,Soneji
| | Sample_contact_email | s.soneji@ucl.ac.uk
| | Sample_contact_department | Biomedicinskt Centrum
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Sölvegatan 19
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097815/suppl/GSM1097815_CCL28_1.CEL.gz
| | Sample_series_id | GSE45136
| | Sample_data_row_count | 54675
| | |
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GSM1097816 | GPL570 |
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CCL28 expanded HSPCs rep2
|
HSPCs expanded with SCF+CCL28
|
isolation source: cord blood
cell type: hematopoietic stem- and progenitor cells (HSPCs)
|
|
| Sample_geo_accession | GSM1097816
| | Sample_status | Public on Jun 03 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Jun 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 1x10^5 sorted CB-derived CD34+ cells were cultured for 18 hours in either SCF alone, or SCF in combination with TPO and CCL28, respectively.
| | Sample_growth_protocol_ch1 | HSPCs were cultured in Serum-Free Expansion Medium (StemCell Technologies) supplemented with stem cell factor.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cell lysates were processed through QIAshredder columns (Qiagen) and total cellular RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was amplified using the NuGen FFPE amplification kit (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were biotin labelled using Affymetrix protocols
| | Sample_hyb_protocol | Hybridisation was performed as per Affymetrix protocols
| | Sample_scan_protocol | Scanning was performed as per Affymetrix protocols
| | Sample_data_processing | Data were dChip summarised.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shamit,,Soneji
| | Sample_contact_email | s.soneji@ucl.ac.uk
| | Sample_contact_department | Biomedicinskt Centrum
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Sölvegatan 19
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097816/suppl/GSM1097816_CCL28_2.CEL.gz
| | Sample_series_id | GSE45136
| | Sample_data_row_count | 54675
| | |
|
GSM1097817 | GPL570 |
|
CCL28 expanded HSPCs rep3
|
HSPCs expanded with SCF+CCL28
|
isolation source: cord blood
cell type: hematopoietic stem- and progenitor cells (HSPCs)
|
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| Sample_geo_accession | GSM1097817
| | Sample_status | Public on Jun 03 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Jun 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 1x10^5 sorted CB-derived CD34+ cells were cultured for 18 hours in either SCF alone, or SCF in combination with TPO and CCL28, respectively.
| | Sample_growth_protocol_ch1 | HSPCs were cultured in Serum-Free Expansion Medium (StemCell Technologies) supplemented with stem cell factor.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cell lysates were processed through QIAshredder columns (Qiagen) and total cellular RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was amplified using the NuGen FFPE amplification kit (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were biotin labelled using Affymetrix protocols
| | Sample_hyb_protocol | Hybridisation was performed as per Affymetrix protocols
| | Sample_scan_protocol | Scanning was performed as per Affymetrix protocols
| | Sample_data_processing | Data were dChip summarised.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shamit,,Soneji
| | Sample_contact_email | s.soneji@ucl.ac.uk
| | Sample_contact_department | Biomedicinskt Centrum
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Sölvegatan 19
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097817/suppl/GSM1097817_CCL28_3.CEL.gz
| | Sample_series_id | GSE45136
| | Sample_data_row_count | 54675
| | |
|
GSM1097818 | GPL570 |
|
TPO expanded HSPCs rep1
|
HSPCs expanded with SCF+TPO
|
isolation source: cord blood
cell type: hematopoietic stem- and progenitor cells (HSPCs)
|
|
| Sample_geo_accession | GSM1097818
| | Sample_status | Public on Jun 03 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Jun 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 1x10^5 sorted CB-derived CD34+ cells were cultured for 18 hours in either SCF alone, or SCF in combination with TPO and CCL28, respectively.
| | Sample_growth_protocol_ch1 | HSPCs were cultured in Serum-Free Expansion Medium (StemCell Technologies) supplemented with stem cell factor.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cell lysates were processed through QIAshredder columns (Qiagen) and total cellular RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was amplified using the NuGen FFPE amplification kit (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were biotin labelled using Affymetrix protocols
| | Sample_hyb_protocol | Hybridisation was performed as per Affymetrix protocols
| | Sample_scan_protocol | Scanning was performed as per Affymetrix protocols
| | Sample_data_processing | Data were dChip summarised.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shamit,,Soneji
| | Sample_contact_email | s.soneji@ucl.ac.uk
| | Sample_contact_department | Biomedicinskt Centrum
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Sölvegatan 19
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097818/suppl/GSM1097818_TPO_1.CEL.gz
| | Sample_series_id | GSE45136
| | Sample_data_row_count | 54675
| | |
|
GSM1097819 | GPL570 |
|
TPO expanded HSPCs rep2
|
HSPCs expanded with SCF+TPO
|
isolation source: cord blood
cell type: hematopoietic stem- and progenitor cells (HSPCs)
|
|
| Sample_geo_accession | GSM1097819
| | Sample_status | Public on Jun 03 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Jun 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 1x10^5 sorted CB-derived CD34+ cells were cultured for 18 hours in either SCF alone, or SCF in combination with TPO and CCL28, respectively.
| | Sample_growth_protocol_ch1 | HSPCs were cultured in Serum-Free Expansion Medium (StemCell Technologies) supplemented with stem cell factor.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cell lysates were processed through QIAshredder columns (Qiagen) and total cellular RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was amplified using the NuGen FFPE amplification kit (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were biotin labelled using Affymetrix protocols
| | Sample_hyb_protocol | Hybridisation was performed as per Affymetrix protocols
| | Sample_scan_protocol | Scanning was performed as per Affymetrix protocols
| | Sample_data_processing | Data were dChip summarised.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shamit,,Soneji
| | Sample_contact_email | s.soneji@ucl.ac.uk
| | Sample_contact_department | Biomedicinskt Centrum
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Sölvegatan 19
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097819/suppl/GSM1097819_TPO_2.CEL.gz
| | Sample_series_id | GSE45136
| | Sample_data_row_count | 54675
| | |
|
GSM1097820 | GPL570 |
|
TPO expanded HSPCs rep3
|
HSPCs expanded with SCF+TPO
|
isolation source: cord blood
cell type: hematopoietic stem- and progenitor cells (HSPCs)
|
|
| Sample_geo_accession | GSM1097820
| | Sample_status | Public on Jun 03 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Jun 03 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 1x10^5 sorted CB-derived CD34+ cells were cultured for 18 hours in either SCF alone, or SCF in combination with TPO and CCL28, respectively.
| | Sample_growth_protocol_ch1 | HSPCs were cultured in Serum-Free Expansion Medium (StemCell Technologies) supplemented with stem cell factor.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cell lysates were processed through QIAshredder columns (Qiagen) and total cellular RNA was extracted using the RNeasy Mini Kit (Qiagen). RNA was amplified using the NuGen FFPE amplification kit (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were biotin labelled using Affymetrix protocols
| | Sample_hyb_protocol | Hybridisation was performed as per Affymetrix protocols
| | Sample_scan_protocol | Scanning was performed as per Affymetrix protocols
| | Sample_data_processing | Data were dChip summarised.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Shamit,,Soneji
| | Sample_contact_email | s.soneji@ucl.ac.uk
| | Sample_contact_department | Biomedicinskt Centrum
| | Sample_contact_institute | Lund University
| | Sample_contact_address | Sölvegatan 19
| | Sample_contact_city | Lund
| | Sample_contact_zip/postal_code | 221 84
| | Sample_contact_country | Sweden
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097820/suppl/GSM1097820_TPO_3.CEL.gz
| | Sample_series_id | GSE45136
| | Sample_data_row_count | 54675
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