Search results for the GEO ID: GSE45143  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1097873 | GPL1261 |
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E12 distal retina progenitors_control_rep 1
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control retinal progenitors
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strain background: ICR
genotype/variation: alpha-cre
developmental stage: E12
tissue: Embryonic retina/optic cup
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Control_alpha-Cre_E12_r1
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| Sample_geo_accession | GSM1097873
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eye dissociation was preformed with 25 units/ml papain for 30 minutes followed by mechanical dissociation. Dissociated cells were resuspended in HBSS.
| | Sample_growth_protocol_ch1 | alpha-Cre or Pax6 flox alpha-Cre female ICR mice were time mated with wildtype or Pax6 flox ICR males respectively. 12 days after vaginal plug detection pregnant dames were euthanized and embryos dissected out. Eye were taken out and dissociated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | according to the instruction manual, as described in the Affymetrix website
| | Sample_hyb_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_scan_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_data_processing | RMA normalization, summarization by mean (using Affymetrix expression console)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chen,,Farhy
| | Sample_contact_laboratory | Ruth Ashery-Padan
| | Sample_contact_department | Department of Human Molecular Genetics and Biochemistry
| | Sample_contact_institute | Tel-Aviv University
| | Sample_contact_address | Tel Aviv University
| | Sample_contact_city | Tel Aviv
| | Sample_contact_zip/postal_code | 69978
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097873/suppl/GSM1097873_Control_rep1.CEL.gz
| | Sample_series_id | GSE45143
| | Sample_data_row_count | 45101
| | |
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GSM1097874 | GPL1261 |
|
E12 distal retina progenitors_control_rep 2
|
control retinal progenitors
|
strain background: ICR
genotype/variation: alpha-cre
developmental stage: E12
tissue: Embryonic retina/optic cup
|
Control_alpha-Cre_E12_r2
|
| Sample_geo_accession | GSM1097874
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eye dissociation was preformed with 25 units/ml papain for 30 minutes followed by mechanical dissociation. Dissociated cells were resuspended in HBSS.
| | Sample_growth_protocol_ch1 | alpha-Cre or Pax6 flox alpha-Cre female ICR mice were time mated with wildtype or Pax6 flox ICR males respectively. 12 days after vaginal plug detection pregnant dames were euthanized and embryos dissected out. Eye were taken out and dissociated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | according to the instruction manual, as described in the Affymetrix website
| | Sample_hyb_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_scan_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_data_processing | RMA normalization, summarization by mean (using Affymetrix expression console)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chen,,Farhy
| | Sample_contact_laboratory | Ruth Ashery-Padan
| | Sample_contact_department | Department of Human Molecular Genetics and Biochemistry
| | Sample_contact_institute | Tel-Aviv University
| | Sample_contact_address | Tel Aviv University
| | Sample_contact_city | Tel Aviv
| | Sample_contact_zip/postal_code | 69978
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097874/suppl/GSM1097874_Control_rep2.CEL.gz
| | Sample_series_id | GSE45143
| | Sample_data_row_count | 45101
| | |
|
GSM1097875 | GPL1261 |
|
E12 distal retina progenitors_control_rep 3
|
control retinal progenitors
|
strain background: ICR
genotype/variation: alpha-cre
developmental stage: E12
tissue: Embryonic retina/optic cup
|
Control_alpha-Cre_E12_r3
|
| Sample_geo_accession | GSM1097875
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eye dissociation was preformed with 25 units/ml papain for 30 minutes followed by mechanical dissociation. Dissociated cells were resuspended in HBSS.
| | Sample_growth_protocol_ch1 | alpha-Cre or Pax6 flox alpha-Cre female ICR mice were time mated with wildtype or Pax6 flox ICR males respectively. 12 days after vaginal plug detection pregnant dames were euthanized and embryos dissected out. Eye were taken out and dissociated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | according to the instruction manual, as described in the Affymetrix website
| | Sample_hyb_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_scan_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_data_processing | RMA normalization, summarization by mean (using Affymetrix expression console)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chen,,Farhy
| | Sample_contact_laboratory | Ruth Ashery-Padan
| | Sample_contact_department | Department of Human Molecular Genetics and Biochemistry
| | Sample_contact_institute | Tel-Aviv University
| | Sample_contact_address | Tel Aviv University
| | Sample_contact_city | Tel Aviv
| | Sample_contact_zip/postal_code | 69978
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097875/suppl/GSM1097875_Control_rep3.CEL.gz
| | Sample_series_id | GSE45143
| | Sample_data_row_count | 45101
| | |
|
GSM1097876 | GPL1261 |
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E12 distal retina progenitors_mutant_rep 1
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Pax6 negative retinal progenitors
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strain background: ICR
genotype/variation: Pax6 flox alpha-cre
developmental stage: E12
tissue: Embryonic retina/optic cup
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Mutant_Pax6 flox alpha-Cre_E12_r1
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| Sample_geo_accession | GSM1097876
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eye dissociation was preformed with 25 units/ml papain for 30 minutes followed by mechanical dissociation. Dissociated cells were resuspended in HBSS.
| | Sample_growth_protocol_ch1 | alpha-Cre or Pax6 flox alpha-Cre female ICR mice were time mated with wildtype or Pax6 flox ICR males respectively. 12 days after vaginal plug detection pregnant dames were euthanized and embryos dissected out. Eye were taken out and dissociated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | according to the instruction manual, as described in the Affymetrix website
| | Sample_hyb_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_scan_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_data_processing | RMA normalization, summarization by mean (using Affymetrix expression console)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chen,,Farhy
| | Sample_contact_laboratory | Ruth Ashery-Padan
| | Sample_contact_department | Department of Human Molecular Genetics and Biochemistry
| | Sample_contact_institute | Tel-Aviv University
| | Sample_contact_address | Tel Aviv University
| | Sample_contact_city | Tel Aviv
| | Sample_contact_zip/postal_code | 69978
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097876/suppl/GSM1097876_Mutant_rep1.CEL.gz
| | Sample_series_id | GSE45143
| | Sample_data_row_count | 45101
| | |
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GSM1097877 | GPL1261 |
|
E12 distal retina progenitors_mutant_rep 2
|
Pax6 negative retinal progenitors
|
strain background: ICR
genotype/variation: Pax6 flox alpha-cre
developmental stage: E12
tissue: Embryonic retina/optic cup
|
Mutant_Pax6 flox alpha-Cre_E12_r2
|
| Sample_geo_accession | GSM1097877
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eye dissociation was preformed with 25 units/ml papain for 30 minutes followed by mechanical dissociation. Dissociated cells were resuspended in HBSS.
| | Sample_growth_protocol_ch1 | alpha-Cre or Pax6 flox alpha-Cre female ICR mice were time mated with wildtype or Pax6 flox ICR males respectively. 12 days after vaginal plug detection pregnant dames were euthanized and embryos dissected out. Eye were taken out and dissociated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | according to the instruction manual, as described in the Affymetrix website
| | Sample_hyb_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_scan_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_data_processing | RMA normalization, summarization by mean (using Affymetrix expression console)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chen,,Farhy
| | Sample_contact_laboratory | Ruth Ashery-Padan
| | Sample_contact_department | Department of Human Molecular Genetics and Biochemistry
| | Sample_contact_institute | Tel-Aviv University
| | Sample_contact_address | Tel Aviv University
| | Sample_contact_city | Tel Aviv
| | Sample_contact_zip/postal_code | 69978
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097877/suppl/GSM1097877_Mutant_rep2.CEL.gz
| | Sample_series_id | GSE45143
| | Sample_data_row_count | 45101
| | |
|
GSM1097878 | GPL1261 |
|
E12 distal retina progenitors_mutant_rep 3
|
Pax6 negative retinal progenitors
|
strain background: ICR
genotype/variation: Pax6 flox alpha-cre
developmental stage: E12
tissue: Embryonic retina/optic cup
|
Mutant_Pax6 flox alpha-Cre_E12_r3
|
| Sample_geo_accession | GSM1097878
| | Sample_status | Public on Aug 01 2013
| | Sample_submission_date | Mar 13 2013
| | Sample_last_update_date | Aug 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Eye dissociation was preformed with 25 units/ml papain for 30 minutes followed by mechanical dissociation. Dissociated cells were resuspended in HBSS.
| | Sample_growth_protocol_ch1 | alpha-Cre or Pax6 flox alpha-Cre female ICR mice were time mated with wildtype or Pax6 flox ICR males respectively. 12 days after vaginal plug detection pregnant dames were euthanized and embryos dissected out. Eye were taken out and dissociated.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | according to the instruction manual, as described in the Affymetrix website
| | Sample_hyb_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_scan_protocol | according to the instruction manual, as described in the Affymetrix website
| | Sample_data_processing | RMA normalization, summarization by mean (using Affymetrix expression console)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Chen,,Farhy
| | Sample_contact_laboratory | Ruth Ashery-Padan
| | Sample_contact_department | Department of Human Molecular Genetics and Biochemistry
| | Sample_contact_institute | Tel-Aviv University
| | Sample_contact_address | Tel Aviv University
| | Sample_contact_city | Tel Aviv
| | Sample_contact_zip/postal_code | 69978
| | Sample_contact_country | Israel
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1097nnn/GSM1097878/suppl/GSM1097878_Mutant_rep3.CEL.gz
| | Sample_series_id | GSE45143
| | Sample_data_row_count | 45101
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