Search results for the GEO ID: GSE45197  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1098952 | GPL570 |
|
VEH_801
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098952
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098952/suppl/GSM1098952_801_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098953 | GPL570 |
|
IDH1i_808
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098953
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098953/suppl/GSM1098953_808_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098954 | GPL570 |
|
IDH1i_942
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098954
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098954/suppl/GSM1098954_942_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098955 | GPL570 |
|
IDH1i_959
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098955
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098955/suppl/GSM1098955_959_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098956 | GPL570 |
|
VEH_962
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098956
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098956/suppl/GSM1098956_962_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098957 | GPL570 |
|
VEH_965
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098957
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098957/suppl/GSM1098957_965_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098958 | GPL570 |
|
IDH1i_975
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098958
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098958/suppl/GSM1098958_975_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098959 | GPL570 |
|
VEH_978
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098959
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098959/suppl/GSM1098959_978_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098960 | GPL570 |
|
IDH1i_980
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098960
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098960/suppl/GSM1098960_980_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098961 | GPL570 |
|
VEH_995
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098961
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098961/suppl/GSM1098961_995_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098962 | GPL570 |
|
VEH_mr1
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098962
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098962/suppl/GSM1098962_DR01_mr1_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098963 | GPL570 |
|
VEH_mr3
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098963
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098963/suppl/GSM1098963_DR03_mr3_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098964 | GPL570 |
|
VEH_mr4
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098964
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098964/suppl/GSM1098964_DR04_mr4_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098965 | GPL570 |
|
VEH_mr5
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098965
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098965/suppl/GSM1098965_DR05_mr5_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098966 | GPL570 |
|
VEH_mr6
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098966
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098966/suppl/GSM1098966_DR06_mr6_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098967 | GPL570 |
|
VEH_mr7
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098967
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098967/suppl/GSM1098967_DR07_mr7_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098968 | GPL570 |
|
VEH_mr9
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098968
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098968/suppl/GSM1098968_DR09_mr9_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098969 | GPL570 |
|
VEH_mr10
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: vehicle
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 1
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098969
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098969/suppl/GSM1098969_DR10_mr10_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098970 | GPL570 |
|
150mg/kg_mr12
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 150mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098970
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098970/suppl/GSM1098970_DR12_mr12_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098971 | GPL570 |
|
150mg/kg_mr13
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 150mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098971
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098971/suppl/GSM1098971_DR13_mr13_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098972 | GPL570 |
|
150mg/kg_mr14
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 150mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098972
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098972/suppl/GSM1098972_DR14_mr14_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098973 | GPL570 |
|
150mg/kg_mr15
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 150mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098973
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098973/suppl/GSM1098973_DR15_mr15_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098974 | GPL570 |
|
150mg/kg_mr16
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 150mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098974
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098974/suppl/GSM1098974_DR16_mr16_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098975 | GPL570 |
|
150mg/kg_mr17
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 150mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098975
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098975/suppl/GSM1098975_DR17_mr17_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098976 | GPL570 |
|
150mg/kg_mr18
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 150mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098976
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098976/suppl/GSM1098976_DR18_mr18_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098977 | GPL570 |
|
150mg/kg_mr19
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 150mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098977
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098977/suppl/GSM1098977_DR19_mr19_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098978 | GPL570 |
|
450mg/kg_mr31
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 450mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098978
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098978/suppl/GSM1098978_DR21_mr31_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098979 | GPL570 |
|
450mg/kg_mr32
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 450mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098979
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098979/suppl/GSM1098979_DR22_mr32_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098980 | GPL570 |
|
450mg/kg_mr34
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 450mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098980
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098980/suppl/GSM1098980_DR24_mr34_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098981 | GPL570 |
|
450mg/kg_mr36
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 450mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098981
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098981/suppl/GSM1098981_DR25_mr36_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098982 | GPL570 |
|
450mg/kg_mr38
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 450mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098982
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098982/suppl/GSM1098982_DR26_mr38_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
| | |
|
GSM1098983 | GPL570 |
|
450mg/kg_mr39
|
Oligodendroglioma
|
mutation: R132H-IDH1
treatment: 450mg/kg AGI-5198
tissue: Oligodendroglioma
|
TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
|
| Sample_geo_accession | GSM1098983
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098983/suppl/GSM1098983_DR27_mr39_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
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GSM1098984 | GPL570 |
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450mg/kg_mr40
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Oligodendroglioma
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mutation: R132H-IDH1
treatment: 450mg/kg AGI-5198
tissue: Oligodendroglioma
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TS603 R132H Glioma Xenograft Experiment 2
Gene Expression Data from xenografts
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| Sample_geo_accession | GSM1098984
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Mar 15 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Mice were treated with the indicated treated once a day by gavage.
| | Sample_growth_protocol_ch1 | SCID mice were injected subcutaneously with 10^6 glioma cells, which were suspended in 100 mL of a 50:50 mixture of growth media and Matrigel (BD #356237). Once tumors had reached a measurable size, mice were randomized into the indicated treatment groups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted by Qiagen RNeasy Lipid Tissue kit according to the manufactuer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 200ng of your samples were amplified/labeled using the Affymetrix 3’IVT Express kit for 4 hours.
| | Sample_hyb_protocol | cRNA was hybridized according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was analzyed using Partek Genomics Suite and Treeview software
| | Sample_platform_id | GPL570
| | Sample_contact_name | Daniel,,Rohle
| | Sample_contact_email | rohled@mskcc.org
| | Sample_contact_laboratory | Ingo Mellinghoff Lab
| | Sample_contact_department | The Human Oncology and Pathogenesis Program
| | Sample_contact_institute | Memorial Sloan Kettering Cancer Center
| | Sample_contact_address | 1275 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1098nnn/GSM1098984/suppl/GSM1098984_DR28_mr40_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE45197
| | Sample_series_id | GSE45200
| | Sample_data_row_count | 54675
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