Search results for the GEO ID: GSE45295  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1101714 | GPL570 |
|
siCABIN1 1
|
HeLa cells nucleofacted with CABIN1 siRNA
|
cell type: HeLa
genotype/variation: nucleofacted with CABIN1 siRNA
|
Gene expression data from HeLA cells and NTG control
|
| Sample_geo_accession | GSM1101714
| | Sample_status | Public on Mar 20 2013
| | Sample_submission_date | Mar 19 2013
| | Sample_last_update_date | Mar 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | Hela cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 40ng of RNA was amplified using the WT-Ovation Pico RNA Amplification system (NuGEN, San Carlos, CA).
| | Sample_hyb_protocol | Subsequent labelling and hybrisation to HG_U133 Plus 2.0 arrays (Affymetrix, Santa Clara, CA) using the FL-Ovation cDNA Biotin Module v2.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 running GCOS software.
| | Sample_data_processing | The data were analyzed with RMA (Bioconductor) using Affymetrix default analysis settings and quantile normalisation as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1101nnn/GSM1101714/suppl/GSM1101714_siCabin1_1.CEL.gz
| | Sample_series_id | GSE45295
| | Sample_data_row_count | 54675
| | |
|
GSM1101715 | GPL570 |
|
siCABIN1 2
|
HeLa cells nucleofacted with CABIN1 siRNA
|
cell type: HeLa
genotype/variation: nucleofacted with CABIN1 siRNA
|
Gene expression data from HeLA cells and NTG control
|
| Sample_geo_accession | GSM1101715
| | Sample_status | Public on Mar 20 2013
| | Sample_submission_date | Mar 19 2013
| | Sample_last_update_date | Mar 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | Hela cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 40ng of RNA was amplified using the WT-Ovation Pico RNA Amplification system (NuGEN, San Carlos, CA).
| | Sample_hyb_protocol | Subsequent labelling and hybrisation to HG_U133 Plus 2.0 arrays (Affymetrix, Santa Clara, CA) using the FL-Ovation cDNA Biotin Module v2.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 running GCOS software.
| | Sample_data_processing | The data were analyzed with RMA (Bioconductor) using Affymetrix default analysis settings and quantile normalisation as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1101nnn/GSM1101715/suppl/GSM1101715_siCabin1_2.CEL.gz
| | Sample_series_id | GSE45295
| | Sample_data_row_count | 54675
| | |
|
GSM1101716 | GPL570 |
|
siCABIN1 3
|
HeLa cells nucleofacted with CABIN1 siRNA
|
cell type: HeLa
genotype/variation: nucleofacted with CABIN1 siRNA
|
Gene expression data from HeLA cells and NTG control
|
| Sample_geo_accession | GSM1101716
| | Sample_status | Public on Mar 20 2013
| | Sample_submission_date | Mar 19 2013
| | Sample_last_update_date | Mar 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | Hela cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 40ng of RNA was amplified using the WT-Ovation Pico RNA Amplification system (NuGEN, San Carlos, CA).
| | Sample_hyb_protocol | Subsequent labelling and hybrisation to HG_U133 Plus 2.0 arrays (Affymetrix, Santa Clara, CA) using the FL-Ovation cDNA Biotin Module v2.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 running GCOS software.
| | Sample_data_processing | The data were analyzed with RMA (Bioconductor) using Affymetrix default analysis settings and quantile normalisation as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1101nnn/GSM1101716/suppl/GSM1101716_siCabin1_3.CEL.gz
| | Sample_series_id | GSE45295
| | Sample_data_row_count | 54675
| | |
|
GSM1101717 | GPL570 |
|
siHIRA 1
|
HeLa cells nucleofacted with HIRA siRNA
|
cell type: HeLa
genotype/variation: nucleofacted with HIRA siRNA
|
Gene expression data from HeLA cells and NTG control
|
| Sample_geo_accession | GSM1101717
| | Sample_status | Public on Mar 20 2013
| | Sample_submission_date | Mar 19 2013
| | Sample_last_update_date | Mar 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | Hela cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 40ng of RNA was amplified using the WT-Ovation Pico RNA Amplification system (NuGEN, San Carlos, CA).
| | Sample_hyb_protocol | Subsequent labelling and hybrisation to HG_U133 Plus 2.0 arrays (Affymetrix, Santa Clara, CA) using the FL-Ovation cDNA Biotin Module v2.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 running GCOS software.
| | Sample_data_processing | The data were analyzed with RMA (Bioconductor) using Affymetrix default analysis settings and quantile normalisation as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1101nnn/GSM1101717/suppl/GSM1101717_siHIRA1.CEL.gz
| | Sample_series_id | GSE45295
| | Sample_data_row_count | 54675
| | |
|
GSM1101718 | GPL570 |
|
siHIRA 2
|
HeLa cells nucleofacted with HIRA siRNA
|
cell type: HeLa
genotype/variation: nucleofacted with HIRA siRNA
|
Gene expression data from HeLA cells and siHIRA knockdown
|
| Sample_geo_accession | GSM1101718
| | Sample_status | Public on Mar 20 2013
| | Sample_submission_date | Mar 19 2013
| | Sample_last_update_date | Mar 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | Hela cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 40ng of RNA was amplified using the WT-Ovation Pico RNA Amplification system (NuGEN, San Carlos, CA).
| | Sample_hyb_protocol | Subsequent labelling and hybrisation to HG_U133 Plus 2.0 arrays (Affymetrix, Santa Clara, CA) using the FL-Ovation cDNA Biotin Module v2.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 running GCOS software.
| | Sample_data_processing | The data were analyzed with RMA (Bioconductor) using Affymetrix default analysis settings and quantile normalisation as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1101nnn/GSM1101718/suppl/GSM1101718_siHIRA2.CEL.gz
| | Sample_series_id | GSE45295
| | Sample_data_row_count | 54675
| | |
|
GSM1101719 | GPL570 |
|
siHIRA 3
|
HeLa cells nucleofacted with HIRA siRNA
|
cell type: HeLa
genotype/variation: nucleofacted with HIRA siRNA
|
Gene expression data from HeLA cells and siHIRA knockdown
|
| Sample_geo_accession | GSM1101719
| | Sample_status | Public on Mar 20 2013
| | Sample_submission_date | Mar 19 2013
| | Sample_last_update_date | Mar 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | Hela cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 40ng of RNA was amplified using the WT-Ovation Pico RNA Amplification system (NuGEN, San Carlos, CA).
| | Sample_hyb_protocol | Subsequent labelling and hybrisation to HG_U133 Plus 2.0 arrays (Affymetrix, Santa Clara, CA) using the FL-Ovation cDNA Biotin Module v2.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 running GCOS software.
| | Sample_data_processing | The data were analyzed with RMA (Bioconductor) using Affymetrix default analysis settings and quantile normalisation as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1101nnn/GSM1101719/suppl/GSM1101719_siHIRA3.CEL.gz
| | Sample_series_id | GSE45295
| | Sample_data_row_count | 54675
| | |
|
GSM1101720 | GPL570 |
|
NTG 1
|
HeLa cells nucleofacted with Dharmacon control siRNA
|
cell type: HeLa
genotype/variation: nucleofacted with Dharmacon control siRNA
|
Gene expression data from HeLA cells and siHIRA knockdown
|
| Sample_geo_accession | GSM1101720
| | Sample_status | Public on Mar 20 2013
| | Sample_submission_date | Mar 19 2013
| | Sample_last_update_date | Mar 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | Hela cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 40ng of RNA was amplified using the WT-Ovation Pico RNA Amplification system (NuGEN, San Carlos, CA).
| | Sample_hyb_protocol | Subsequent labelling and hybrisation to HG_U133 Plus 2.0 arrays (Affymetrix, Santa Clara, CA) using the FL-Ovation cDNA Biotin Module v2.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 running GCOS software.
| | Sample_data_processing | The data were analyzed with RMA (Bioconductor) using Affymetrix default analysis settings and quantile normalisation as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1101nnn/GSM1101720/suppl/GSM1101720_siNTG1.CEL.gz
| | Sample_series_id | GSE45295
| | Sample_data_row_count | 54675
| | |
|
GSM1101721 | GPL570 |
|
NTG 2
|
HeLa cells nucleofacted with Dharmacon control siRNA
|
cell type: HeLa
genotype/variation: nucleofacted with Dharmacon control siRNA
|
Gene expression data from HeLA cells and siHIRA knockdown
|
| Sample_geo_accession | GSM1101721
| | Sample_status | Public on Mar 20 2013
| | Sample_submission_date | Mar 19 2013
| | Sample_last_update_date | Mar 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | Hela cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 40ng of RNA was amplified using the WT-Ovation Pico RNA Amplification system (NuGEN, San Carlos, CA).
| | Sample_hyb_protocol | Subsequent labelling and hybrisation to HG_U133 Plus 2.0 arrays (Affymetrix, Santa Clara, CA) using the FL-Ovation cDNA Biotin Module v2.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 running GCOS software.
| | Sample_data_processing | The data were analyzed with RMA (Bioconductor) using Affymetrix default analysis settings and quantile normalisation as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1101nnn/GSM1101721/suppl/GSM1101721_siNTG2.CEL.gz
| | Sample_series_id | GSE45295
| | Sample_data_row_count | 54675
| | |
|
GSM1101722 | GPL570 |
|
NTG 3
|
HeLa cells nucleofacted with Dharmacon control siRNA
|
cell type: HeLa
genotype/variation: nucleofacted with Dharmacon control siRNA
|
Gene expression data from HeLA cells and siHIRA knockdown
|
| Sample_geo_accession | GSM1101722
| | Sample_status | Public on Mar 20 2013
| | Sample_submission_date | Mar 19 2013
| | Sample_last_update_date | Mar 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | No treatment other then nucleofaction
| | Sample_growth_protocol_ch1 | Hela cells were nucleofacted with respective siRNAs and RNA was isolated after 72 hours
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | RNA was extracted using RNA easy mini kit Cat:74104
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 40ng of RNA was amplified using the WT-Ovation Pico RNA Amplification system (NuGEN, San Carlos, CA).
| | Sample_hyb_protocol | Subsequent labelling and hybrisation to HG_U133 Plus 2.0 arrays (Affymetrix, Santa Clara, CA) using the FL-Ovation cDNA Biotin Module v2.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 running GCOS software.
| | Sample_data_processing | The data were analyzed with RMA (Bioconductor) using Affymetrix default analysis settings and quantile normalisation as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Tony,,McBryan
| | Sample_contact_email | tony@mcbryan.co.uk
| | Sample_contact_institute | University of Glasgow, Beatson Institute for Cancer Research
| | Sample_contact_address | Switchback Rd, Bearsden
| | Sample_contact_city | Glasgow
| | Sample_contact_zip/postal_code | G61 1BD
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1101nnn/GSM1101722/suppl/GSM1101722_siNTG3.CEL.gz
| | Sample_series_id | GSE45295
| | Sample_data_row_count | 54675
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