Search results for the GEO ID: GSE45491  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1105583 | GPL1261 |
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Untreated palatal mesenchymal cells
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Palatal mesenchymal cells; untreated
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treatment: untreated
tissue: Palatal mesenchymal cells
genotype: outbred wild-type
age: E14.0
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Gene expression data from untreated palatal mesenchymal cells
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| Sample_geo_accession | GSM1105583
| | Sample_status | Public on Mar 27 2013
| | Sample_submission_date | Mar 25 2013
| | Sample_last_update_date | Mar 27 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated either with SB431542 (group 3) or 5Z-7-Oxozeaenol (group 4) for 60 minutes and stimulated with TGF-beta2 for 120 minutes. Control cells were treated with TGF-beta2 (group2) for 120 minutes or not treated at all (group 1).
| | Sample_growth_protocol_ch1 | Palatal mesenchymal cell cultures were established from E14.0 mouse embryos.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were isolated using an Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 500 ng of total RNA was amplified and biotin-labeled according to the GeneChip 3'IVT Expression Kit User Manual (Affymetrix).
| | Sample_hyb_protocol | The biotin-labeled RNAs were fragmented and hybrixized to a GeneChip at 45oC for 16 hours.
| | Sample_scan_protocol | The chips were scanned by GENEChip Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed by Affymetrix GeneChip-related software packages GCOS, Data mining Tool and Affymetrix web database 'NetAffx'.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vesa,Matti,Kaartinen
| | Sample_contact_email | vesak@umich.edu
| | Sample_contact_phone | 734 615 4726
| | Sample_contact_laboratory | Kaartinen
| | Sample_contact_department | BMS
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1011 N. University
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1105nnn/GSM1105583/suppl/GSM1105583_TaoJin_VE1_Mouse430_2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1105nnn/GSM1105583/suppl/GSM1105583_TaoJin_VE1_Mouse430_2_2.CHP.gz
| | Sample_series_id | GSE45491
| | Sample_data_row_count | 45101
| | |
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GSM1105584 | GPL1261 |
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Palatal mesenchymal cells treated with TGF-beta2
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Palatal mesenchymal cells; treated with TGF-beta2
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treatment: treated with TGF-beta2
tissue: Palatal mesenchymal cells
genotype: outbred wild-type
age: E14.0
|
Gene expression data from palatal mesenchymal cells treated with TGF-beta2
|
| Sample_geo_accession | GSM1105584
| | Sample_status | Public on Mar 27 2013
| | Sample_submission_date | Mar 25 2013
| | Sample_last_update_date | Mar 27 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated either with SB431542 (group 3) or 5Z-7-Oxozeaenol (group 4) for 60 minutes and stimulated with TGF-beta2 for 120 minutes. Control cells were treated with TGF-beta2 (group2) for 120 minutes or not treated at all (group 1).
| | Sample_growth_protocol_ch1 | Palatal mesenchymal cell cultures were established from E14.0 mouse embryos.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were isolated using an Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 500 ng of total RNA was amplified and biotin-labeled according to the GeneChip 3'IVT Expression Kit User Manual (Affymetrix).
| | Sample_hyb_protocol | The biotin-labeled RNAs were fragmented and hybrixized to a GeneChip at 45oC for 16 hours.
| | Sample_scan_protocol | The chips were scanned by GENEChip Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed by Affymetrix GeneChip-related software packages GCOS, Data mining Tool and Affymetrix web database 'NetAffx'.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vesa,Matti,Kaartinen
| | Sample_contact_email | vesak@umich.edu
| | Sample_contact_phone | 734 615 4726
| | Sample_contact_laboratory | Kaartinen
| | Sample_contact_department | BMS
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1011 N. University
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1105nnn/GSM1105584/suppl/GSM1105584_TaoJin_VE2_Mouse430_2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1105nnn/GSM1105584/suppl/GSM1105584_TaoJin_VE2_Mouse430_2_2.CHP.gz
| | Sample_series_id | GSE45491
| | Sample_data_row_count | 45101
| | |
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GSM1105585 | GPL1261 |
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Palatal mesenchymal cells treated with SB431542 and TGF-beta2
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Palatal mesenchymal cells; treated with TGF-beta2 and with SB431542
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treatment: treated with SB431542 and TGF-beta2
tissue: Palatal mesenchymal cells
genotype: outbred wild-type
age: E14.0
|
Gene expression data from palatal mesenchymal cells treated with TGF-beta2 in the presence with the TGF-beta type I receptor inhibitor SB431542
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| Sample_geo_accession | GSM1105585
| | Sample_status | Public on Mar 27 2013
| | Sample_submission_date | Mar 25 2013
| | Sample_last_update_date | Mar 27 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated either with SB431542 (group 3) or 5Z-7-Oxozeaenol (group 4) for 60 minutes and stimulated with TGF-beta2 for 120 minutes. Control cells were treated with TGF-beta2 (group2) for 120 minutes or not treated at all (group 1).
| | Sample_growth_protocol_ch1 | Palatal mesenchymal cell cultures were established from E14.0 mouse embryos.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were isolated using an Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 500 ng of total RNA was amplified and biotin-labeled according to the GeneChip 3'IVT Expression Kit User Manual (Affymetrix).
| | Sample_hyb_protocol | The biotin-labeled RNAs were fragmented and hybrixized to a GeneChip at 45oC for 16 hours.
| | Sample_scan_protocol | The chips were scanned by GENEChip Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed by Affymetrix GeneChip-related software packages GCOS, Data mining Tool and Affymetrix web database 'NetAffx'.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vesa,Matti,Kaartinen
| | Sample_contact_email | vesak@umich.edu
| | Sample_contact_phone | 734 615 4726
| | Sample_contact_laboratory | Kaartinen
| | Sample_contact_department | BMS
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1011 N. University
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1105nnn/GSM1105585/suppl/GSM1105585_TaoJin_VE3_Mouse430_2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1105nnn/GSM1105585/suppl/GSM1105585_TaoJin_VE3_Mouse430_2_2.CHP.gz
| | Sample_series_id | GSE45491
| | Sample_data_row_count | 45101
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GSM1105586 | GPL1261 |
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Palatal mesenchymal cells treated with 5Z-7-Oxozeaenol and TGF-beta2
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Palatal mesenchymal cells; treated with TGF-beta2 and with5Z-7-Oxozeaenol
|
treatment: treated with 5Z-7-Oxozeaenol and TGF-beta2
tissue: Palatal mesenchymal cells
genotype: outbred wild-type
age: E14.0
|
Gene expression data from palatal mesenchymal cells treated with TGF-beta2 in the presence with the Tak1 kinase inhibitor 5Z-7-Oxozeaenol
|
| Sample_geo_accession | GSM1105586
| | Sample_status | Public on Mar 27 2013
| | Sample_submission_date | Mar 25 2013
| | Sample_last_update_date | Mar 27 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated either with SB431542 (group 3) or 5Z-7-Oxozeaenol (group 4) for 60 minutes and stimulated with TGF-beta2 for 120 minutes. Control cells were treated with TGF-beta2 (group2) for 120 minutes or not treated at all (group 1).
| | Sample_growth_protocol_ch1 | Palatal mesenchymal cell cultures were established from E14.0 mouse embryos.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were isolated using an Rneasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 500 ng of total RNA was amplified and biotin-labeled according to the GeneChip 3'IVT Expression Kit User Manual (Affymetrix).
| | Sample_hyb_protocol | The biotin-labeled RNAs were fragmented and hybrixized to a GeneChip at 45oC for 16 hours.
| | Sample_scan_protocol | The chips were scanned by GENEChip Scanner 3000 7G System
| | Sample_data_processing | The data were analyzed by Affymetrix GeneChip-related software packages GCOS, Data mining Tool and Affymetrix web database 'NetAffx'.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Vesa,Matti,Kaartinen
| | Sample_contact_email | vesak@umich.edu
| | Sample_contact_phone | 734 615 4726
| | Sample_contact_laboratory | Kaartinen
| | Sample_contact_department | BMS
| | Sample_contact_institute | University of Michigan
| | Sample_contact_address | 1011 N. University
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | MI
| | Sample_contact_zip/postal_code | 48109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1105nnn/GSM1105586/suppl/GSM1105586_TaoJin_VE4_Mouse430_2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1105nnn/GSM1105586/suppl/GSM1105586_TaoJin_VE4_Mouse430_2_2.CHP.gz
| | Sample_series_id | GSE45491
| | Sample_data_row_count | 45101
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