Search results for the GEO ID: GSE45583  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1110133 | GPL1261 |
|
KO_1
|
Lsd1-hypomorphic heart
|
genotype/variation: 2lox/2lox; Lsd1 knock-out
developmental stage: E18.5
tissue: embryonic heart
|
KO_793122
|
| Sample_geo_accession | GSM1110133
| | Sample_status | Public on Mar 29 2013
| | Sample_submission_date | Mar 28 2013
| | Sample_last_update_date | Mar 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Intact E18.5 hearts were isolated from pups from timed matings, using a dissecting microscope. The tissue was lysed with lysis buffer provided with a QIAGEN Rneasy kit, and disrupted using a QIAGEN TissueLyser for 30 seconds at 30Hz
| | Sample_growth_protocol_ch1 | Embryonic hearts were collected from E18.5 wild-type or 2lox/2lox pups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | A QIAGEN Rneasy Mini Kit was employed to isolate total RNA, employing the manufacturer's recommended protocol
| | Sample_label_ch1 | Biotin/SAPE
| | Sample_label_protocol_ch1 | Biotin/SAPE
| | Sample_hyb_protocol | reconcentrated before labelling // ivt incubation: 12h.
| | Sample_scan_protocol | AffyScannerGCS3000 - Affymetrix GCAS One-Cycle protocol
| | Sample_data_processing | R/BioConductor/LIMMA package using rma normalized data
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,,Loureiro
| | Sample_contact_email | joseph.loureiro@novartis.com
| | Sample_contact_phone | 617-871-5034
| | Sample_contact_institute | Novartis Institutes for Biomedical Research
| | Sample_contact_address | 220 Massaxhusetts Ave.
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1110nnn/GSM1110133/suppl/GSM1110133_NUID-0000-0079-3122.cel.gz
| | Sample_series_id | GSE45583
| | Sample_data_row_count | 45101
| | |
|
GSM1110134 | GPL1261 |
|
KO_2
|
Lsd1-hypomorphic heart
|
genotype/variation: 2lox/2lox; Lsd1 knock-out
developmental stage: E18.5
tissue: embryonic heart
|
KO_793127
|
| Sample_geo_accession | GSM1110134
| | Sample_status | Public on Mar 29 2013
| | Sample_submission_date | Mar 28 2013
| | Sample_last_update_date | Mar 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Intact E18.5 hearts were isolated from pups from timed matings, using a dissecting microscope. The tissue was lysed with lysis buffer provided with a QIAGEN Rneasy kit, and disrupted using a QIAGEN TissueLyser for 30 seconds at 30Hz
| | Sample_growth_protocol_ch1 | Embryonic hearts were collected from E18.5 wild-type or 2lox/2lox pups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | A QIAGEN Rneasy Mini Kit was employed to isolate total RNA, employing the manufacturer's recommended protocol
| | Sample_label_ch1 | Biotin/SAPE
| | Sample_label_protocol_ch1 | Biotin/SAPE
| | Sample_hyb_protocol | reconcentrated before labelling // ivt incubation: 12h.
| | Sample_scan_protocol | AffyScannerGCS3000 - Affymetrix GCAS One-Cycle protocol
| | Sample_data_processing | R/BioConductor/LIMMA package using rma normalized data
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,,Loureiro
| | Sample_contact_email | joseph.loureiro@novartis.com
| | Sample_contact_phone | 617-871-5034
| | Sample_contact_institute | Novartis Institutes for Biomedical Research
| | Sample_contact_address | 220 Massaxhusetts Ave.
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1110nnn/GSM1110134/suppl/GSM1110134_NUID-0000-0079-3127.cel.gz
| | Sample_series_id | GSE45583
| | Sample_data_row_count | 45101
| | |
|
GSM1110135 | GPL1261 |
|
KO_3
|
Lsd1-hypomorphic heart
|
genotype/variation: 2lox/2lox; Lsd1 knock-out
developmental stage: E18.5
tissue: embryonic heart
|
KO_793129
|
| Sample_geo_accession | GSM1110135
| | Sample_status | Public on Mar 29 2013
| | Sample_submission_date | Mar 28 2013
| | Sample_last_update_date | Mar 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Intact E18.5 hearts were isolated from pups from timed matings, using a dissecting microscope. The tissue was lysed with lysis buffer provided with a QIAGEN Rneasy kit, and disrupted using a QIAGEN TissueLyser for 30 seconds at 30Hz
| | Sample_growth_protocol_ch1 | Embryonic hearts were collected from E18.5 wild-type or 2lox/2lox pups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | A QIAGEN Rneasy Mini Kit was employed to isolate total RNA, employing the manufacturer's recommended protocol
| | Sample_label_ch1 | Biotin/SAPE
| | Sample_label_protocol_ch1 | Biotin/SAPE
| | Sample_hyb_protocol | reconcentrated before labelling // ivt incubation: 12h.
| | Sample_scan_protocol | AffyScannerGCS3000 - Affymetrix GCAS One-Cycle protocol
| | Sample_data_processing | R/BioConductor/LIMMA package using rma normalized data
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,,Loureiro
| | Sample_contact_email | joseph.loureiro@novartis.com
| | Sample_contact_phone | 617-871-5034
| | Sample_contact_institute | Novartis Institutes for Biomedical Research
| | Sample_contact_address | 220 Massaxhusetts Ave.
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1110nnn/GSM1110135/suppl/GSM1110135_NUID-0000-0079-3129.cel.gz
| | Sample_series_id | GSE45583
| | Sample_data_row_count | 45101
| | |
|
GSM1110136 | GPL1261 |
|
WT_1
|
wild-type heart
|
genotype/variation: wild type
developmental stage: E18.5
tissue: embryonic heart
|
WT_793123
|
| Sample_geo_accession | GSM1110136
| | Sample_status | Public on Mar 29 2013
| | Sample_submission_date | Mar 28 2013
| | Sample_last_update_date | Mar 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Intact E18.5 hearts were isolated from pups from timed matings, using a dissecting microscope. The tissue was lysed with lysis buffer provided with a QIAGEN Rneasy kit, and disrupted using a QIAGEN TissueLyser for 30 seconds at 30Hz
| | Sample_growth_protocol_ch1 | Embryonic hearts were collected from E18.5 wild-type or 2lox/2lox pups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | A QIAGEN Rneasy Mini Kit was employed to isolate total RNA, employing the manufacturer's recommended protocol
| | Sample_label_ch1 | Biotin/SAPE
| | Sample_label_protocol_ch1 | Biotin/SAPE
| | Sample_hyb_protocol | reconcentrated before labelling // ivt incubation: 12h.
| | Sample_scan_protocol | AffyScannerGCS3000 - Affymetrix GCAS One-Cycle protocol
| | Sample_data_processing | R/BioConductor/LIMMA package using rma normalized data
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,,Loureiro
| | Sample_contact_email | joseph.loureiro@novartis.com
| | Sample_contact_phone | 617-871-5034
| | Sample_contact_institute | Novartis Institutes for Biomedical Research
| | Sample_contact_address | 220 Massaxhusetts Ave.
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1110nnn/GSM1110136/suppl/GSM1110136_NUID-0000-0079-3123.cel.gz
| | Sample_series_id | GSE45583
| | Sample_data_row_count | 45101
| | |
|
GSM1110137 | GPL1261 |
|
WT_2
|
wild-type heart
|
genotype/variation: wild type
developmental stage: E18.5
tissue: embryonic heart
|
WT_793124
|
| Sample_geo_accession | GSM1110137
| | Sample_status | Public on Mar 29 2013
| | Sample_submission_date | Mar 28 2013
| | Sample_last_update_date | Mar 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Intact E18.5 hearts were isolated from pups from timed matings, using a dissecting microscope. The tissue was lysed with lysis buffer provided with a QIAGEN Rneasy kit, and disrupted using a QIAGEN TissueLyser for 30 seconds at 30Hz
| | Sample_growth_protocol_ch1 | Embryonic hearts were collected from E18.5 wild-type or 2lox/2lox pups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | A QIAGEN Rneasy Mini Kit was employed to isolate total RNA, employing the manufacturer's recommended protocol
| | Sample_label_ch1 | Biotin/SAPE
| | Sample_label_protocol_ch1 | Biotin/SAPE
| | Sample_hyb_protocol | reconcentrated before labelling // ivt incubation: 12h.
| | Sample_scan_protocol | AffyScannerGCS3000 - Affymetrix GCAS One-Cycle protocol
| | Sample_data_processing | R/BioConductor/LIMMA package using rma normalized data
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,,Loureiro
| | Sample_contact_email | joseph.loureiro@novartis.com
| | Sample_contact_phone | 617-871-5034
| | Sample_contact_institute | Novartis Institutes for Biomedical Research
| | Sample_contact_address | 220 Massaxhusetts Ave.
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1110nnn/GSM1110137/suppl/GSM1110137_NUID-0000-0079-3124.cel.gz
| | Sample_series_id | GSE45583
| | Sample_data_row_count | 45101
| | |
|
GSM1110138 | GPL1261 |
|
WT_3
|
wild-type heart
|
genotype/variation: wild type
developmental stage: E18.5
tissue: embryonic heart
|
WT_793125
|
| Sample_geo_accession | GSM1110138
| | Sample_status | Public on Mar 29 2013
| | Sample_submission_date | Mar 28 2013
| | Sample_last_update_date | Mar 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Intact E18.5 hearts were isolated from pups from timed matings, using a dissecting microscope. The tissue was lysed with lysis buffer provided with a QIAGEN Rneasy kit, and disrupted using a QIAGEN TissueLyser for 30 seconds at 30Hz
| | Sample_growth_protocol_ch1 | Embryonic hearts were collected from E18.5 wild-type or 2lox/2lox pups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | A QIAGEN Rneasy Mini Kit was employed to isolate total RNA, employing the manufacturer's recommended protocol
| | Sample_label_ch1 | Biotin/SAPE
| | Sample_label_protocol_ch1 | Biotin/SAPE
| | Sample_hyb_protocol | reconcentrated before labelling // ivt incubation: 12h.
| | Sample_scan_protocol | AffyScannerGCS3000 - Affymetrix GCAS One-Cycle protocol
| | Sample_data_processing | R/BioConductor/LIMMA package using rma normalized data
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,,Loureiro
| | Sample_contact_email | joseph.loureiro@novartis.com
| | Sample_contact_phone | 617-871-5034
| | Sample_contact_institute | Novartis Institutes for Biomedical Research
| | Sample_contact_address | 220 Massaxhusetts Ave.
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1110nnn/GSM1110138/suppl/GSM1110138_NUID-0000-0079-3125.cel.gz
| | Sample_series_id | GSE45583
| | Sample_data_row_count | 45101
| | |
|
GSM1110139 | GPL1261 |
|
WT_4
|
wild-type heart
|
genotype/variation: wild type
developmental stage: E18.5
tissue: embryonic heart
|
WT_793126
|
| Sample_geo_accession | GSM1110139
| | Sample_status | Public on Mar 29 2013
| | Sample_submission_date | Mar 28 2013
| | Sample_last_update_date | Mar 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Intact E18.5 hearts were isolated from pups from timed matings, using a dissecting microscope. The tissue was lysed with lysis buffer provided with a QIAGEN Rneasy kit, and disrupted using a QIAGEN TissueLyser for 30 seconds at 30Hz
| | Sample_growth_protocol_ch1 | Embryonic hearts were collected from E18.5 wild-type or 2lox/2lox pups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | A QIAGEN Rneasy Mini Kit was employed to isolate total RNA, employing the manufacturer's recommended protocol
| | Sample_label_ch1 | Biotin/SAPE
| | Sample_label_protocol_ch1 | Biotin/SAPE
| | Sample_hyb_protocol | reconcentrated before labelling // ivt incubation: 12h.
| | Sample_scan_protocol | AffyScannerGCS3000 - Affymetrix GCAS One-Cycle protocol
| | Sample_data_processing | R/BioConductor/LIMMA package using rma normalized data
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,,Loureiro
| | Sample_contact_email | joseph.loureiro@novartis.com
| | Sample_contact_phone | 617-871-5034
| | Sample_contact_institute | Novartis Institutes for Biomedical Research
| | Sample_contact_address | 220 Massaxhusetts Ave.
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1110nnn/GSM1110139/suppl/GSM1110139_NUID-0000-0079-3126.cel.gz
| | Sample_series_id | GSE45583
| | Sample_data_row_count | 45101
| | |
|
GSM1110140 | GPL1261 |
|
WT_5
|
wild-type heart
|
genotype/variation: wild type
developmental stage: E18.5
tissue: embryonic heart
|
WT_793128
|
| Sample_geo_accession | GSM1110140
| | Sample_status | Public on Mar 29 2013
| | Sample_submission_date | Mar 28 2013
| | Sample_last_update_date | Mar 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Intact E18.5 hearts were isolated from pups from timed matings, using a dissecting microscope. The tissue was lysed with lysis buffer provided with a QIAGEN Rneasy kit, and disrupted using a QIAGEN TissueLyser for 30 seconds at 30Hz
| | Sample_growth_protocol_ch1 | Embryonic hearts were collected from E18.5 wild-type or 2lox/2lox pups.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | A QIAGEN Rneasy Mini Kit was employed to isolate total RNA, employing the manufacturer's recommended protocol
| | Sample_label_ch1 | Biotin/SAPE
| | Sample_label_protocol_ch1 | Biotin/SAPE
| | Sample_hyb_protocol | reconcentrated before labelling // ivt incubation: 12h.
| | Sample_scan_protocol | AffyScannerGCS3000 - Affymetrix GCAS One-Cycle protocol
| | Sample_data_processing | R/BioConductor/LIMMA package using rma normalized data
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Joseph,,Loureiro
| | Sample_contact_email | joseph.loureiro@novartis.com
| | Sample_contact_phone | 617-871-5034
| | Sample_contact_institute | Novartis Institutes for Biomedical Research
| | Sample_contact_address | 220 Massaxhusetts Ave.
| | Sample_contact_city | Cambridge
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02139
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1110nnn/GSM1110140/suppl/GSM1110140_NUID-0000-0079-3128.cel.gz
| | Sample_series_id | GSE45583
| | Sample_data_row_count | 45101
| | |
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