Search results for the GEO ID: GSE4567 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM101996 | GPL570 |
|
endothelial cell_control_rep1(53)
|
human pulmonary artery endothelial cell control
|
Human pulmonary artery endothelial cells.
treatment: 4h control
|
We profiled gene expression of human pulmonary artery endothelial cells exposed to ultrafine Chapel Hill particles (100ug/ml) or vehicle for 4h.
|
Sample_geo_accession | GSM101996
| Sample_status | Public on Jan 26 2007
| Sample_submission_date | Mar 28 2006
| Sample_last_update_date | Jan 26 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent (GIBCO BRL Life Technologies, Gaithersburg, MD) and purified with Qiagen RNeasy mini columns (Qiagen, Valencia, CA) according to manufacturer’s protocols. Total RNA was resuspended in RNase free water and assessed with the Agilent 2100 Bioanalyzer and RNA 6000 Nano assay (Agilent Technologies, Palo Alto, CA). All RNA samples had a 28S/18S ratio ≥ 1.8 and were stored at -80°C prior to shipment on dry ice to Expression Analysis Inc, (Durham, NC).
| Sample_label_ch1 | enzo biotin label
| Sample_label_protocol_ch1 | see affymetrix protocol
| Sample_hyb_protocol | see affymetrix protocol
| Sample_scan_protocol | see affymetrix protocol
| Sample_data_processing | GCOS; raw value no transformation
| Sample_platform_id | GPL570
| Sample_contact_name | Edward,,Karoly
| Sample_contact_email | karoly.edward@epa.gov
| Sample_contact_phone | (919)843-8031
| Sample_contact_department | HSD
| Sample_contact_institute | U.S. EPA
| Sample_contact_address | MD 58D
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27711
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101996/suppl/GSM101996.CEL.gz
| Sample_series_id | GSE4567
| Sample_data_row_count | 54675
| |
|
GSM101997 | GPL570 |
|
endothelial cell_control_rep2(54)
|
human pulmonary artery endothelial cell
|
human pulmonary artery endothelial cells
treatment: 4h control
|
We profiled gene expression of human pulmonary artery endothelial cells exposed to ultrafine Chapel Hill particles (100ugt/ml) or vehicle for 4h.
|
Sample_geo_accession | GSM101997
| Sample_status | Public on Jan 26 2007
| Sample_submission_date | Mar 28 2006
| Sample_last_update_date | Jan 26 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent (GIBCO BRL Life Technologies, Gaithersburg, MD) and purified with Qiagen RNeasy mini columns (Qiagen, Valencia, CA) according to manufacturer’s protocols. Total RNA was resuspended in RNase free water and assessed with the Agilent 2100 Bioanalyzer and RNA 6000 Nano assay (Agilent Technologies, Palo Alto, CA). All RNA samples had a 28S/18S ratio ≥ 1.8 and were stored at -80°C prior to shipment on dry ice to Expression Analysis Inc, (Durham, NC).
| Sample_label_ch1 | enzo biotin label
| Sample_label_protocol_ch1 | see affymetrix protocol
| Sample_hyb_protocol | see affymetrix protocol
| Sample_scan_protocol | see affymetrix protocol
| Sample_data_processing | GCOS; raw value no transformation
| Sample_platform_id | GPL570
| Sample_contact_name | Edward,,Karoly
| Sample_contact_email | karoly.edward@epa.gov
| Sample_contact_phone | (919)843-8031
| Sample_contact_department | HSD
| Sample_contact_institute | U.S. EPA
| Sample_contact_address | MD 58D
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27711
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101997/suppl/GSM101997.CEL.gz
| Sample_series_id | GSE4567
| Sample_data_row_count | 54675
| |
|
GSM101998 | GPL570 |
|
endothelial cell_control_rep3(55)
|
human pulmonary artery endothelial cell
|
Human pulmonary artery endothelial cell culture. Treatment: 4h control
|
We profiled gene expression of human pulmonary artery endothelial cells exposed to ultrafine Chapel Hill particles (100ug/ml) or vehicle for 4h.
|
Sample_geo_accession | GSM101998
| Sample_status | Public on Jan 26 2007
| Sample_submission_date | Mar 28 2006
| Sample_last_update_date | Jan 26 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent (GIBCO BRL Life Technologies, Gaithersburg, MD) and purified with Qiagen RNeasy mini columns (Qiagen, Valencia, CA) according to manufacturer’s protocols. Total RNA was resuspended in RNase free water and assessed with the Agilent 2100 Bioanalyzer and RNA 6000 Nano assay (Agilent Technologies, Palo Alto, CA). All RNA samples had a 28S/18S ratio ≥ 1.8 and were stored at -80°C prior to shipment on dry ice to Expression Analysis Inc, (Durham, NC).
| Sample_label_ch1 | enzo biotin label
| Sample_label_protocol_ch1 | see affymetrix manual
| Sample_hyb_protocol | see affymetrix manual
| Sample_scan_protocol | see affymetrix manual
| Sample_data_processing | GCOS; raw value no transformation
| Sample_platform_id | GPL570
| Sample_contact_name | Edward,,Karoly
| Sample_contact_email | karoly.edward@epa.gov
| Sample_contact_phone | (919)843-8031
| Sample_contact_department | HSD
| Sample_contact_institute | U.S. EPA
| Sample_contact_address | MD 58D
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27711
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101998/suppl/GSM101998.CEL.gz
| Sample_series_id | GSE4567
| Sample_data_row_count | 54675
| |
|
GSM101999 | GPL570 |
|
endothelial cell_control_rep4(56)
|
human pulmonary artery endothelial cell
|
Human pulmonary artery endothelial cell culture. Treatment: 4h control
|
We profiled gene expression of human pulmonary artery endothelial cells exposed to ultrafine Chapel Hill particles (100ugt/ml) or vehicle for 4h.
|
Sample_geo_accession | GSM101999
| Sample_status | Public on Jan 26 2007
| Sample_submission_date | Mar 28 2006
| Sample_last_update_date | Jan 26 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent (GIBCO BRL Life Technologies, Gaithersburg, MD) and purified with Qiagen RNeasy mini columns (Qiagen, Valencia, CA) according to manufacturer’s protocols. Total RNA was resuspended in RNase free water and assessed with the Agilent 2100 Bioanalyzer and RNA 6000 Nano assay (Agilent Technologies, Palo Alto, CA). All RNA samples had a 28S/18S ratio ≥ 1.8 and were stored at -80°C prior to shipment on dry ice to Expression Analysis Inc, (Durham, NC).
| Sample_label_ch1 | enzo biotin label
| Sample_label_protocol_ch1 | see affymetrix manual
| Sample_hyb_protocol | see affymetrix manual
| Sample_scan_protocol | see affymetrix manual
| Sample_data_processing | GCOS; raw value no transformation
| Sample_platform_id | GPL570
| Sample_contact_name | Edward,,Karoly
| Sample_contact_email | karoly.edward@epa.gov
| Sample_contact_phone | (919)843-8031
| Sample_contact_department | HSD
| Sample_contact_institute | U.S. EPA
| Sample_contact_address | MD 58D
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27711
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101999/suppl/GSM101999.CEL.gz
| Sample_series_id | GSE4567
| Sample_data_row_count | 54675
| |
|
GSM102000 | GPL570 |
|
endothelial cell_UFP treatment_rep1(57)
|
human pulmonary artery endothelial cell
|
human pulmonary artery endothelial cell. Treatment: Ultrafine particle treatment (100ug/ml).
|
We profiled gene expression of human pulmonary artery endothelial cells exposed to ultrafine Chapel Hill particles (100ug/ml) or vehicle for 4h.
|
Sample_geo_accession | GSM102000
| Sample_status | Public on Jan 26 2007
| Sample_submission_date | Mar 28 2006
| Sample_last_update_date | Jan 26 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent (GIBCO BRL Life Technologies, Gaithersburg, MD) and purified with Qiagen RNeasy mini columns (Qiagen, Valencia, CA) according to manufacturer’s protocols. Total RNA was resuspended in RNase free water and assessed with the Agilent 2100 Bioanalyzer and RNA 6000 Nano assay (Agilent Technologies, Palo Alto, CA). All RNA samples had a 28S/18S ratio ≥ 1.8 and were stored at -80°C prior to shipment on dry ice to Expression Analysis Inc, (Durham, NC).
| Sample_label_ch1 | enzo biotin label
| Sample_label_protocol_ch1 | see affymetrix manual
| Sample_hyb_protocol | see affymetrix manual
| Sample_scan_protocol | see affymetrix manual
| Sample_data_processing | GCOS; raw value no transformation
| Sample_platform_id | GPL570
| Sample_contact_name | Edward,,Karoly
| Sample_contact_email | karoly.edward@epa.gov
| Sample_contact_phone | (919)843-8031
| Sample_contact_department | HSD
| Sample_contact_institute | U.S. EPA
| Sample_contact_address | MD 58D
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27711
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM102nnn/GSM102000/suppl/GSM102000.CEL.gz
| Sample_series_id | GSE4567
| Sample_data_row_count | 54675
| |
|
GSM102001 | GPL570 |
|
endothelial cell_UFP treatment_rep2(58)
|
human pulmonary artery endothelial cell
|
Human pulmonary artery endothelial cell cultrure. Treatment: 4h ultrafine particle (100ug/ml)
|
We profiled gene expression of human pulmonary artery endothelial cells exposed to ultrafine Chapel Hill particles (100ug/ml) or vehicle for 4h.
|
Sample_geo_accession | GSM102001
| Sample_status | Public on Jan 26 2007
| Sample_submission_date | Mar 28 2006
| Sample_last_update_date | Jan 26 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent (GIBCO BRL Life Technologies, Gaithersburg, MD) and purified with Qiagen RNeasy mini columns (Qiagen, Valencia, CA) according to manufacturer’s protocols. Total RNA was resuspended in RNase free water and assessed with the Agilent 2100 Bioanalyzer and RNA 6000 Nano assay (Agilent Technologies, Palo Alto, CA). All RNA samples had a 28S/18S ratio ≥ 1.8 and were stored at -80°C prior to shipment on dry ice to Expression Analysis Inc, (Durham, NC).
| Sample_label_ch1 | enzo biotin label
| Sample_label_protocol_ch1 | see affymetrix manual
| Sample_hyb_protocol | see affymetrix manual
| Sample_scan_protocol | see affymetrix manual
| Sample_data_processing | GCOS; raw value no transformation
| Sample_platform_id | GPL570
| Sample_contact_name | Edward,,Karoly
| Sample_contact_email | karoly.edward@epa.gov
| Sample_contact_phone | (919)843-8031
| Sample_contact_department | HSD
| Sample_contact_institute | U.S. EPA
| Sample_contact_address | MD 58D
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27711
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM102nnn/GSM102001/suppl/GSM102001.CEL.gz
| Sample_series_id | GSE4567
| Sample_data_row_count | 54675
| |
|
GSM102002 | GPL570 |
|
endothelial cell_UFP treatment_rep3(59)
|
human pulmonary artery endothelial cell
|
human pulmonary artery endothelial cell culture. Treatment: 4h Ultrafine particle (100ug/ml)
|
We profiled gene expression of human pulmonary artery endothelial cells exposed to ultrafine Chapel Hill particles (100ug/ml) or vehicle for 4h.
|
Sample_geo_accession | GSM102002
| Sample_status | Public on Jan 26 2007
| Sample_submission_date | Mar 28 2006
| Sample_last_update_date | Jan 26 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent (GIBCO BRL Life Technologies, Gaithersburg, MD) and purified with Qiagen RNeasy mini columns (Qiagen, Valencia, CA) according to manufacturer’s protocols. Total RNA was resuspended in RNase free water and assessed with the Agilent 2100 Bioanalyzer and RNA 6000 Nano assay (Agilent Technologies, Palo Alto, CA). All RNA samples had a 28S/18S ratio ≥ 1.8 and were stored at -80°C prior to shipment on dry ice to Expression Analysis Inc, (Durham, NC).
| Sample_label_ch1 | enzo biotin label
| Sample_label_protocol_ch1 | see affymetrix manual
| Sample_hyb_protocol | see affymetrix manual
| Sample_scan_protocol | see affymetrix manual
| Sample_data_processing | GCOS; raw value no transformation
| Sample_platform_id | GPL570
| Sample_contact_name | Edward,,Karoly
| Sample_contact_email | karoly.edward@epa.gov
| Sample_contact_phone | (919)843-8031
| Sample_contact_department | HSD
| Sample_contact_institute | U.S. EPA
| Sample_contact_address | MD 58D
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27711
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM102nnn/GSM102002/suppl/GSM102002.CEL.gz
| Sample_series_id | GSE4567
| Sample_data_row_count | 54675
| |
|
GSM102003 | GPL570 |
|
endothelial cell_UFP treatment_rep4(60)
|
human pulmonary artery endothelial cell
|
Human pulmonary artery endothelial cell culture. Treatment: 4h Ultrafine particle (100ug/ml)
|
We profiled gene expression of human pulmonary artery endothelial cells exposed to ultrafine Chapel Hill particles (100ug/ml) or vehicle for 4h.
|
Sample_geo_accession | GSM102003
| Sample_status | Public on Jan 26 2007
| Sample_submission_date | Mar 28 2006
| Sample_last_update_date | Jan 26 2007
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent (GIBCO BRL Life Technologies, Gaithersburg, MD) and purified with Qiagen RNeasy mini columns (Qiagen, Valencia, CA) according to manufacturer’s protocols. Total RNA was resuspended in RNase free water and assessed with the Agilent 2100 Bioanalyzer and RNA 6000 Nano assay (Agilent Technologies, Palo Alto, CA). All RNA samples had a 28S/18S ratio ≥ 1.8 and were stored at -80°C prior to shipment on dry ice to Expression Analysis Inc, (Durham, NC).
| Sample_label_ch1 | enzo biotin label
| Sample_label_protocol_ch1 | see affymetrix protocol
| Sample_hyb_protocol | see affymetrix protocol
| Sample_scan_protocol | see affymetrix protocol
| Sample_data_processing | GCOS; raw value no transformation
| Sample_platform_id | GPL570
| Sample_contact_name | Edward,,Karoly
| Sample_contact_email | karoly.edward@epa.gov
| Sample_contact_phone | (919)843-8031
| Sample_contact_department | HSD
| Sample_contact_institute | U.S. EPA
| Sample_contact_address | MD 58D
| Sample_contact_city | RTP
| Sample_contact_state | NC
| Sample_contact_zip/postal_code | 27711
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM102nnn/GSM102003/suppl/GSM102003.CEL.gz
| Sample_series_id | GSE4567
| Sample_data_row_count | 54675
| |
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