Search results for the GEO ID: GSE45744  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1113543 | GPL1261 |
|
normal lung - nontransgenic - 1
|
Murine nontransgenic normal lung
|
strain: FVB
gender: m
tissue: lung
|
Gene expression data from normal FVB murine lung tissue
|
| Sample_geo_accession | GSM1113543
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113543/suppl/GSM1113543_SF080107_Sample_Tg-1.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113544 | GPL1261 |
|
normal lung - nontransgenic - 2
|
Murine nontransgenic normal lung
|
strain: FVB
gender: m
tissue: lung
|
Gene expression data from normal FVB murine lung tissue
|
| Sample_geo_accession | GSM1113544
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113544/suppl/GSM1113544_SF080107_Sample_Tg-2.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113545 | GPL1261 |
|
normal lung - nontransgenic - 3
|
Murine nontransgenic normal lung
|
strain: FVB
gender: m
tissue: lung
|
Gene expression data from normal FVB murine lung tissue
|
| Sample_geo_accession | GSM1113545
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113545/suppl/GSM1113545_SF080107_Sample_Tg-4.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113546 | GPL1261 |
|
normal lung - nontransgenic - 4
|
Murine nontransgenic normal lung
|
strain: FVB
gender: m
tissue: lung
|
Gene expression data from normal FVB murine lung tissue
|
| Sample_geo_accession | GSM1113546
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113546/suppl/GSM1113546_SF080107_Sample_Tg-45N.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113547 | GPL1261 |
|
normal lung - transgenic- 1
|
Murine cyclin E transgenic normal lung
|
strain: FVB transgene human surfactant protein C promoter-driven wild-type human Cyclin E
gender: m
tissue: lung
|
Gene expression data from normal lung of lung-specific Cyclin E overexpressing mice, tissue adjacent to sample TGT6
|
| Sample_geo_accession | GSM1113547
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113547/suppl/GSM1113547_SF080107_Sample_Tg+5.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113548 | GPL1261 |
|
normal lung - transgenic- 2
|
Murine cyclin E transgenic normal lung
|
strain: FVB transgene human surfactant protein C promoter-driven wild-type human Cyclin E
gender: m
tissue: lung
|
Gene expression data from normal lung of lung-specific Cyclin E overexpressing mice, tissue adjacent to sample TGT13
|
| Sample_geo_accession | GSM1113548
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113548/suppl/GSM1113548_SF080107_Sample_Tg+12.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113549 | GPL1261 |
|
normal lung - transgenic- 3
|
Murine cyclin E transgenic normal lung
|
strain: FVB transgene human surfactant protein C promoter-driven wild-type human Cyclin E
gender: m
tissue: lung
|
Gene expression data from normal lung of lung-specific Cyclin E overexpressing mice, tissue adjacent to sample TGT15
|
| Sample_geo_accession | GSM1113549
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113549/suppl/GSM1113549_SF080107_Sample_Tg+14.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113550 | GPL1261 |
|
normal lung - transgenic- 4
|
Murine cyclin E transgenic normal lung
|
strain: FVB transgene human surfactant protein C promoter-driven wild-type human Cyclin E
gender: m
tissue: lung
|
Gene expression data from normal lung of lung-specific Cyclin E overexpressing mice, tissue adjacent to sample TGT17
|
| Sample_geo_accession | GSM1113550
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113550/suppl/GSM1113550_SF080107_Sample_Tg+16.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113551 | GPL1261 |
|
lung tumor - transgenic - 1
|
Murine cyclin E transgenic lung tumor
|
strain: FVB transgene human surfactant protein C promoter-driven wild-type human Cyclin E
gender: m
tissue: lung adenocarcinoma
|
Gene expression data from lung adenocarcinoma of lung-specific Cyclin E overexpressing mice, tissue adjacent to sample TG+5
|
| Sample_geo_accession | GSM1113551
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113551/suppl/GSM1113551_SF080107_Sample_TGT6.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113552 | GPL1261 |
|
lung tumor - transgenic - 2
|
Murine cyclin E transgenic lung tumor
|
strain: FVB transgene human surfactant protein C promoter-driven wild-type human Cyclin E
gender: m
tissue: lung adenocarcinoma
|
Gene expression data from lung adenocarcinoma of lung-specific Cyclin E overexpressing mice, tissue adjacent to sample TG+12
|
| Sample_geo_accession | GSM1113552
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113552/suppl/GSM1113552_SF080107_Sample_TGT13.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
| | |
|
GSM1113553 | GPL1261 |
|
lung tumor - transgenic - 3
|
Murine cyclin E transgenic lung tumor
|
strain: FVB transgene human surfactant protein C promoter-driven wild-type human Cyclin E
gender: m
tissue: lung adenocarcinoma
|
Gene expression data from lung adenocarcinoma of lung-specific Cyclin E overexpressing mice, tissue adjacent to sample TG+14
|
| Sample_geo_accession | GSM1113553
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113553/suppl/GSM1113553_SF080107_Sample_TGT15.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
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GSM1113554 | GPL1261 |
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lung tumor - transgenic - 4
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Murine cyclin E transgenic lung tumor
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strain: FVB transgene human surfactant protein C promoter-driven wild-type human Cyclin E
gender: m
tissue: lung adenocarcinoma
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Gene expression data from lung adenocarcinoma of lung-specific Cyclin E overexpressing mice, tissue adjacent to sample TG+16
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| Sample_geo_accession | GSM1113554
| | Sample_status | Public on Apr 04 2013
| | Sample_submission_date | Apr 03 2013
| | Sample_last_update_date | Apr 04 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Normal lung tissue and adenocarcinomas were identified by gross pathology and isolated and stored in RNAlater (Qiagen)
| | Sample_growth_protocol_ch1 | FVB nontransgenic and human surfactant protein C promoter-driven human cyclin E expressing transgenes were allowed to age to 7-11 months
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with Trizol as per the manufacturer's instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | Hybridizations were performed according to Affymetrix guidelines at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation.
| | Sample_scan_protocol | GeneChips were scanned at the Dartmouth College Microarray Shared Resource using an Affymetrix GeneChip Workstation
| | Sample_data_processing | Raw data was converted to GC-RMA in the GeneSifter Analysis Edition (Geospiza Inc.) for subsequent analysis
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sarah,,Freemantle
| | Sample_contact_email | freemantle@dartmouth.edu
| | Sample_contact_phone | 6036501714
| | Sample_contact_fax | 6036501129
| | Sample_contact_department | Pharmacology and Toxicology
| | Sample_contact_institute | Geisel School of Medicine at Dartmouth
| | Sample_contact_address | HB7650
| | Sample_contact_city | Hanover
| | Sample_contact_state | NH
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1113nnn/GSM1113554/suppl/GSM1113554_SF080107_Sample_TGT17.CEL.gz
| | Sample_series_id | GSE45744
| | Sample_data_row_count | 45101
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