Search results for the GEO ID: GSE46088  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1123150 | GPL1261 |
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MigR1 transduced, ethanol treated rep 1
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MigR1 transduced, ethanol treated rep 1
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cell line: T29 thymic lymphoma cell line
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| Sample_geo_accession | GSM1123150
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 100 nM 4OHT or ethanol for 24h.
| | Sample_growth_protocol_ch1 | Clles were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123150/suppl/GSM1123150_Mig_EtOH1.CEL.gz
| | Sample_series_id | GSE46088
| | Sample_data_row_count | 45101
| | |
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GSM1123151 | GPL1261 |
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MigR1 transduced, 4OHT treated rep1
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MigR1 transduced, 4OHT treated rep1
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cell line: T29 thymic lymphoma cell line
|
|
| Sample_geo_accession | GSM1123151
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 100 nM 4OHT or ethanol for 24h.
| | Sample_growth_protocol_ch1 | Clles were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123151/suppl/GSM1123151_Mig_Tam1.CEL.gz
| | Sample_series_id | GSE46088
| | Sample_data_row_count | 45101
| | |
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GSM1123152 | GPL1261 |
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MigR1 transduced, ethanol treated rep 2
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MigR1 transduced, ethanol treated rep 2
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cell line: T29 thymic lymphoma cell line
|
|
| Sample_geo_accession | GSM1123152
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 100 nM 4OHT or ethanol for 24h.
| | Sample_growth_protocol_ch1 | Clles were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123152/suppl/GSM1123152_Mig_EtOH2.CEL.gz
| | Sample_series_id | GSE46088
| | Sample_data_row_count | 45101
| | |
|
GSM1123153 | GPL1261 |
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MigR1 transduced, 4OHT treated rep 2
|
MigR1 transduced, 4OHT treated rep 2
|
cell line: T29 thymic lymphoma cell line
|
|
| Sample_geo_accession | GSM1123153
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 100 nM 4OHT or ethanol for 24h.
| | Sample_growth_protocol_ch1 | Clles were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123153/suppl/GSM1123153_Mig_Tam2.CEL.gz
| | Sample_series_id | GSE46088
| | Sample_data_row_count | 45101
| | |
|
GSM1123154 | GPL1261 |
|
MigR1-Ik1ER transduced, ethanol treated rep 1
|
MigR1-Ik1ER transduced, ethanol treated rep 1
|
cell line: T29 thymic lymphoma cell line
|
|
| Sample_geo_accession | GSM1123154
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 100 nM 4OHT or ethanol for 24h.
| | Sample_growth_protocol_ch1 | Clles were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123154/suppl/GSM1123154_Ik1ER_EtOH1.CEL.gz
| | Sample_series_id | GSE46088
| | Sample_data_row_count | 45101
| | |
|
GSM1123155 | GPL1261 |
|
MigR1-Ik1ER transduced, 4OHT treated rep 1
|
MigR1-Ik1ER transduced, 4OHT treated rep 1
|
cell line: T29 thymic lymphoma cell line
|
|
| Sample_geo_accession | GSM1123155
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 100 nM 4OHT or ethanol for 24h.
| | Sample_growth_protocol_ch1 | Clles were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123155/suppl/GSM1123155_Ik1ER_Tam1.CEL.gz
| | Sample_series_id | GSE46088
| | Sample_data_row_count | 45101
| | |
|
GSM1123156 | GPL1261 |
|
MigR1-Ik1ER transduced, ethanol treated rep 2
|
MigR1-Ik1ER transduced, ethanol treated rep 2
|
cell line: T29 thymic lymphoma cell line
|
|
| Sample_geo_accession | GSM1123156
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 100 nM 4OHT or ethanol for 24h.
| | Sample_growth_protocol_ch1 | Clles were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123156/suppl/GSM1123156_Ik1ER_EtOH2.CEL.gz
| | Sample_series_id | GSE46088
| | Sample_data_row_count | 45101
| | |
|
GSM1123157 | GPL1261 |
|
MigR1-Ik1ER transduced, 4OHT treated rep 2
|
MigR1-Ik1ER transduced, 4OHT treated rep 2
|
cell line: T29 thymic lymphoma cell line
|
|
| Sample_geo_accession | GSM1123157
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 100 nM 4OHT or ethanol for 24h.
| | Sample_growth_protocol_ch1 | Clles were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123157/suppl/GSM1123157_Ik1ER_Tam2.CEL.gz
| | Sample_series_id | GSE46088
| | Sample_data_row_count | 45101
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