Search results for the GEO ID: GSE46090  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1123162 | GPL1261 |
|
WT DN3 cells rep 1
|
WT DN3 cells rep 1
|
tissue: thymus
genotype/variation: WT
cell type: DN3 cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123162
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123162/suppl/GSM1123162_DN3_WT1.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123163 | GPL1261 |
|
WT DN3 cells rep 2
|
WT DN3 cells rep 2
|
tissue: thymus
genotype/variation: WT
cell type: DN3 cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123163
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123163/suppl/GSM1123163_DN3_WT2.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123164 | GPL1261 |
|
WT DN4 cells rep 1
|
WT DN4 cells rep 1
|
tissue: thymus
genotype/variation: WT
cell type: DN4 cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123164
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123164/suppl/GSM1123164_DN4_WT1.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123165 | GPL1261 |
|
WT DN4 cells rep 2
|
WT DN4 cells rep 2
|
tissue: thymus
genotype/variation: WT
cell type: DN4 cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123165
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123165/suppl/GSM1123165_DN4_WT2.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123166 | GPL1261 |
|
WT DP cells rep 1
|
WT DP cells rep 1
|
tissue: thymus
genotype/variation: WT
cell type: DP cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123166
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123166/suppl/GSM1123166_DP-WT1.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123167 | GPL1261 |
|
WT DP cells rep 2
|
WT DP cells rep 2
|
tissue: thymus
genotype/variation: WT
cell type: DP cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123167
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123167/suppl/GSM1123167_DP_WT2.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123168 | GPL1261 |
|
DN3 cells rep 1
|
DN3 cells rep 1
|
tissue: thymus
genotype/variation: IkL/L
cell type: DN3 cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123168
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123168/suppl/GSM1123168_DN3_IK1.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123169 | GPL1261 |
|
DN3 cells rep 2
|
DN3 cells rep 2
|
tissue: thymus
genotype/variation: IkL/L
cell type: DN3 cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123169
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123169/suppl/GSM1123169_DN3_IK2.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123170 | GPL1261 |
|
DN4 cells rep 1
|
DN4 cells rep 1
|
tissue: thymus
genotype/variation: IkL/L
cell type: DN4 cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123170
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123170/suppl/GSM1123170_DN4_IK1.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123171 | GPL1261 |
|
DN4 cells rep 2
|
DN4 cells rep 2
|
tissue: thymus
genotype/variation: IkL/L
cell type: DN4 cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123171
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123171/suppl/GSM1123171_DN4_IK2.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123172 | GPL1261 |
|
DP cells rep 1
|
DP cells rep 1
|
tissue: thymus
genotype/variation: IkL/L
cell type: DP cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123172
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123172/suppl/GSM1123172_DP_IK1.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
| | |
|
GSM1123173 | GPL1261 |
|
DP cells rep 2
|
DP cells rep 2
|
tissue: thymus
genotype/variation: IkL/L
cell type: DP cells
|
sorted cells from mouse thymus
|
| Sample_geo_accession | GSM1123173
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | NA
| | Sample_growth_protocol_ch1 | NA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy micro kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from [100 ng (A810) ; 50 ng (A1052) ; 15-100 ng (A1031)] of total RNA in a two cycle target labeling assay
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123173/suppl/GSM1123173_DP_IK2.CEL.gz
| | Sample_series_id | GSE46090
| | Sample_data_row_count | 45099
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