Search results for the GEO ID: GSE46095  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1123200 | GPL1261 |
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DMSO-treated cells, rep 1
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DMSO-treated cells, rep 1
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cell line: T29 thymic lymphoma cell line
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| Sample_geo_accession | GSM1123200
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 5mM of the gamma-secretase inhibitor MRK003 (Merck) for 36h.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay.
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123200/suppl/GSM1123200_T29_D1.CEL.gz
| | Sample_series_id | GSE46095
| | Sample_data_row_count | 45101
| | |
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GSM1123201 | GPL1261 |
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DMSO-treated cells, rep 2
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DMSO-treated cells, rep 2
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cell line: T29 thymic lymphoma cell line
|
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| Sample_geo_accession | GSM1123201
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 5mM of the gamma-secretase inhibitor MRK003 (Merck) for 36h.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay.
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123201/suppl/GSM1123201_T29_D2.CEL.gz
| | Sample_series_id | GSE46095
| | Sample_data_row_count | 45101
| | |
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GSM1123202 | GPL1261 |
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GSI treated cells, rep1
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GSI treated cells, rep1
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cell line: T29 thymic lymphoma cell line
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| Sample_geo_accession | GSM1123202
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 5mM of the gamma-secretase inhibitor MRK003 (Merck) for 36h.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay.
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123202/suppl/GSM1123202_T29_G1.CEL.gz
| | Sample_series_id | GSE46095
| | Sample_data_row_count | 45101
| | |
|
GSM1123203 | GPL1261 |
|
GSI treated cells, rep2
|
GSI treated cells, rep2
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cell line: T29 thymic lymphoma cell line
|
|
| Sample_geo_accession | GSM1123203
| | Sample_status | Public on Apr 17 2013
| | Sample_submission_date | Apr 16 2013
| | Sample_last_update_date | Apr 17 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were treated with 5mM of the gamma-secretase inhibitor MRK003 (Merck) for 36h.
| | Sample_growth_protocol_ch1 | Cells were grown in RPMI1640, 10% FCS, 1mM sodium pyruvate, 2mM L-glutamine and 1% antibiotics.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted with the Qiagen RNAeasy kit
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA targets were prepared according to Affymetrix recommendations in GeneChip® Expression Analysis Technical Manual (P/N 702232 Rev.2) starting from 2.0-2.5 µg of total RNA in a one cycle target labeling assay.
| | Sample_hyb_protocol | 10 μg of cRNAs were hybridized for 16 hours at 45oC on GeneChip® Mouse 430 2.0 arrays (Affymetrix)
| | Sample_scan_protocol | The chips were washed and stained in the GeneChip® Fluidics Station 450 (Affymetrix) and scanned with the GeneChip® Scanner 3000 7G (Affymetrix) at a resolution of 1.56 µm.
| | Sample_data_processing | CEL files were processed using Robust Multi-array Average (RMA) algorithms from Bioconductor with default settings to calculate probe set signal intensities
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susan,,Chan
| | Sample_contact_email | scpk@igbmc.fr
| | Sample_contact_phone | 33 3 88 65 34 72
| | Sample_contact_fax | 33 3 88 65 32 01
| | Sample_contact_institute | IGBMC
| | Sample_contact_address | 1, rue Laurent Fries
| | Sample_contact_city | Illkirch
| | Sample_contact_zip/postal_code | 67404
| | Sample_contact_country | France
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1123nnn/GSM1123203/suppl/GSM1123203_T29_G2.CEL.gz
| | Sample_series_id | GSE46095
| | Sample_data_row_count | 45101
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