Search results for the GEO ID: GSE46170 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1125352 | GPL570 |
|
Childhood T-ALL (T65)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125352
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125352/suppl/GSM1125352_immu_OH_091107_T65.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125353 | GPL570 |
|
Childhood T-ALL (T101)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125353
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125353/suppl/GSM1125353_IMMU_OH_250309T101.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125354 | GPL570 |
|
Childhood T-ALL (T76)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125354
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125354/suppl/GSM1125354_immu_OH_70108_T76.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125355 | GPL570 |
|
Childhood T-ALL (T88)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125355
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125355/suppl/GSM1125355_immu_OH_160108_T88.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125356 | GPL570 |
|
Childhood T-ALL (T02)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125356
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125356/suppl/GSM1125356_immu_OH_160108_T2.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125357 | GPL570 |
|
Childhood T-ALL (T87)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125357
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125357/suppl/GSM1125357_IMMU_OH_250309T87.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125358 | GPL570 |
|
Childhood T-ALL (T11)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125358
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125358/suppl/GSM1125358_immu_OH_251007_T11.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125359 | GPL570 |
|
Childhood T-ALL (T92)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125359
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125359/suppl/GSM1125359_immu_OH_70108_T92.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125360 | GPL570 |
|
Childhood T-ALL (T12)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125360
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125360/suppl/GSM1125360_immu_OH_251007_T12.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125361 | GPL570 |
|
Childhood T-ALL (T21)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125361
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125361/suppl/GSM1125361_immu_OH_251007_T21.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125362 | GPL570 |
|
Childhood T-ALL (T68)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125362
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125362/suppl/GSM1125362_immu_OH_160108_T68.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125363 | GPL570 |
|
Childhood T-ALL (T142)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125363
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125363/suppl/GSM1125363_IMMU_OH_130509_T142.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125364 | GPL570 |
|
Childhood T-ALL (T16)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125364
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125364/suppl/GSM1125364_immu_OH_251007_T16.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125365 | GPL570 |
|
Childhood T-ALL (T64)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125365
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125365/suppl/GSM1125365_immu_OH_081107_T64.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125366 | GPL570 |
|
Childhood T-ALL (T43)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125366
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125366/suppl/GSM1125366_immu_OH_081107_T43.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125367 | GPL570 |
|
Childhood T-ALL (T77)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125367
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125367/suppl/GSM1125367_immu_OH_70108_T77.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125368 | GPL570 |
|
Childhood T-ALL (T80)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125368
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125368/suppl/GSM1125368_immu_OH_131107_T80.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125369 | GPL570 |
|
Childhood T-ALL (T70)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125369
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125369/suppl/GSM1125369_immu_OH_70108_T70.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125370 | GPL570 |
|
Childhood T-ALL (T112)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125370
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125370/suppl/GSM1125370_IMMU_OH_130509_112.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125371 | GPL570 |
|
Human Thymus tissue (ISP)
|
Human Thymus tissue
|
cell type: ISP(Immature single positive)
sample subtype: Thymocyte
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125371
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125371/suppl/GSM1125371_IMMU_OH_130509_ISP.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125372 | GPL570 |
|
Childhood T-ALL (T35)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125372
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125372/suppl/GSM1125372_immu_OH_091107_T35.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125373 | GPL570 |
|
Childhood T-ALL (T07)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125373
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125373/suppl/GSM1125373_immu_OH_091107_T07.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125374 | GPL570 |
|
Childhood T-ALL (T84)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125374
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125374/suppl/GSM1125374_immu_OH_131107_T84.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125375 | GPL570 |
|
Childhood T-ALL (T98)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125375
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125375/suppl/GSM1125375_IMMU_OH_130509_98.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125376 | GPL570 |
|
Childhood T-ALL (T86)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125376
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125376/suppl/GSM1125376_IMMU_OH_250309T86.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125377 | GPL570 |
|
Childhood T-ALL (T37)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125377
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125377/suppl/GSM1125377_immu_OH_081107_T37.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125378 | GPL570 |
|
Childhood T-ALL (T99)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125378
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125378/suppl/GSM1125378_IMMU_OH_250309T99.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125379 | GPL570 |
|
Human Thymus tissue (SP4)
|
Human Thymus tissue
|
cell type: Single Positive CD4
sample subtype: Thymocyte
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125379
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125379/suppl/GSM1125379_immu_OH_290208_SP4.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125380 | GPL570 |
|
Human Thymus tissue (SP8)
|
Human Thymus tissue
|
cell type: Single Positive CD8
sample subtype: Thymocyte
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125380
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125380/suppl/GSM1125380_immu_OH_290208_SP8.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125381 | GPL570 |
|
Human Thymus tissue (Total)
|
Human Thymus tissue
|
cell type: Thymus
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125381
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125381/suppl/GSM1125381_immu_OH_160108_tot_thymus.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125382 | GPL570 |
|
Human Thymus tissue (DP3negative)
|
Human Thymus tissue
|
cell type: DP3neg(CD3neg,CD4,CD8poz)
sample subtype: Thymocyte
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125382
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125382/suppl/GSM1125382_immu_OH_290208_DN3neg.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125383 | GPL570 |
|
Childhood T-ALL (T18)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125383
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125383/suppl/GSM1125383_immu_OH_081107_T18.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125384 | GPL570 |
|
Childhood T-ALL (T66)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125384
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125384/suppl/GSM1125384_immu_OH_131107_T66.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125385 | GPL570 |
|
Human Thymus tissue (DN)
|
Human Thymus tissue
|
cell type: DN(CD4CD8 neg)
sample subtype: Thymocyte
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125385
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125385/suppl/GSM1125385_immu_OH_290208_DN.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125386 | GPL570 |
|
Childhood T-ALL (T53)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125386
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125386/suppl/GSM1125386_immu_OH_131107_T53.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125387 | GPL570 |
|
Childhood T-ALL (T89)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125387
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125387/suppl/GSM1125387_immu_OH_70108_T89.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
| |
|
GSM1125388 | GPL570 |
|
Childhood T-ALL (T27)
|
Human bone marrow at the time of diagnosis
|
cell type: Childhood T-cell Acute Lymphoblastic Leukemia
sample subtype: patient
|
Human Whole Genome Gene Expression
|
Sample_geo_accession | GSM1125388
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125388/suppl/GSM1125388_immu_OH_091107_T27.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
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GSM1125389 | GPL570 |
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Human Thymus tissue (Dptot)
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Human Thymus tissue
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cell type: DP3poz tot(CD3,CD4,CD8poz)
sample subtype: Thymocyte
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Human Whole Genome Gene Expression
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Sample_geo_accession | GSM1125389
| Sample_status | Public on Apr 19 2013
| Sample_submission_date | Apr 18 2013
| Sample_last_update_date | Apr 19 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Control thymocyte subsets were sorted by FACS Aria II as described by Weerkamp et al.PNAS 2006
| Sample_growth_protocol_ch1 | 2-3 cc bone marrow samples were obtained from childhood T-ALL patients at the time of diagnosis
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA was isolated with Qiagen Rneasy Plus kit according to the manufacturer's protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
| Sample_hyb_protocol | Following fragmentation, cRNA samples were hybridized for 16 hr at 45C on GeneChip HU-133 Plus.2 Whole Genome Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using GeneChip scanner 3000
| Sample_data_processing | Raw microarray data was normalized by the robust multiarray average (RMA) .The data that shows less than 20% expression values and a 2-fold change in either direction from the genes median value is excluded.
| Sample_platform_id | GPL570
| Sample_contact_name | ozden,,hatirnazng
| Sample_contact_email | ozdenhatirnaz@yahoo.com
| Sample_contact_institute | Istanbul University
| Sample_contact_address | IU DETAE Vakıf Gureba C
| Sample_contact_city | Istanbul
| Sample_contact_zip/postal_code | 34093
| Sample_contact_country | Turkey
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1125nnn/GSM1125389/suppl/GSM1125389_immu_OH_160108_DPtot.CEL.gz
| Sample_series_id | GSE46170
| Sample_data_row_count | 54675
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Make groups for comparisons |
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Select GSMs and click on "Add groups" |
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