Search results for the GEO ID: GSE46239  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1126893 | GPL570 |
|
Healthy Donor [HD_171]
|
skin biopsy specimen_Healthy Donor
|
dx: healthy
age: 47
gender: F
|
|
| Sample_geo_accession | GSM1126893
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126893/suppl/GSM1126893_HD_171.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126894 | GPL570 |
|
Healthy Donor [HD_173A]
|
skin biopsy specimen_Healthy Donor
|
dx: healthy
age: 47
gender: M
|
|
| Sample_geo_accession | GSM1126894
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126894/suppl/GSM1126894_HD_173A.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126895 | GPL570 |
|
Healthy Donor [HD_173B]
|
skin biopsy specimen_Healthy Donor
|
dx: healthy
age: 47
gender: M
|
|
| Sample_geo_accession | GSM1126895
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126895/suppl/GSM1126895_HD_173B.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126896 | GPL570 |
|
Healthy Donor [HD_186]
|
skin biopsy specimen_Healthy Donor
|
dx: healthy
age: 53
gender: M
|
|
| Sample_geo_accession | GSM1126896
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126896/suppl/GSM1126896_HD_186.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126897 | GPL570 |
|
DM Donor [DM_160]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 60
gender: M
|
|
| Sample_geo_accession | GSM1126897
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126897/suppl/GSM1126897_DM_160.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126898 | GPL570 |
|
DM Donor [DM_167]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 45
gender: F
|
|
| Sample_geo_accession | GSM1126898
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126898/suppl/GSM1126898_DM_167.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126899 | GPL570 |
|
DM Donor [DM_182B]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 65
gender: F
|
|
| Sample_geo_accession | GSM1126899
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126899/suppl/GSM1126899_DM_182B.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126900 | GPL570 |
|
DM Donor [DM_201]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 86
gender: F
|
|
| Sample_geo_accession | GSM1126900
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126900/suppl/GSM1126900_DM_201.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126901 | GPL570 |
|
DM Donor [DM_208]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 52
gender: F
|
|
| Sample_geo_accession | GSM1126901
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126901/suppl/GSM1126901_DM_208.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126902 | GPL570 |
|
DM Donor [DM_212A]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 20
gender: F
|
|
| Sample_geo_accession | GSM1126902
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126902/suppl/GSM1126902_DM_212A.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126903 | GPL570 |
|
DM Donor [DM_212B]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 20
gender: F
|
|
| Sample_geo_accession | GSM1126903
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126903/suppl/GSM1126903_DM_212B.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126904 | GPL570 |
|
DM Donor [DM_216]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 48
gender: M
|
|
| Sample_geo_accession | GSM1126904
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126904/suppl/GSM1126904_DM_216.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126905 | GPL570 |
|
DM Donor [DM_217]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 64
gender: F
|
|
| Sample_geo_accession | GSM1126905
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126905/suppl/GSM1126905_DM_217.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126906 | GPL570 |
|
DM Donor [DM_247]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 53
gender: F
|
|
| Sample_geo_accession | GSM1126906
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126906/suppl/GSM1126906_DM_247.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126907 | GPL570 |
|
DM Donor [DM_249]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 40
gender: F
|
|
| Sample_geo_accession | GSM1126907
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126907/suppl/GSM1126907_DM_249.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126908 | GPL570 |
|
DM Donor [DM_258]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 72
gender: F
|
|
| Sample_geo_accession | GSM1126908
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126908/suppl/GSM1126908_DM_258.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126909 | GPL570 |
|
DM Donor [DM_281]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 61
gender: F
|
|
| Sample_geo_accession | GSM1126909
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126909/suppl/GSM1126909_DM_281.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126910 | GPL570 |
|
DM Donor [DM_314]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 53
gender: F
|
|
| Sample_geo_accession | GSM1126910
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126910/suppl/GSM1126910_DM_314.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126911 | GPL570 |
|
DM Donor [DM_315]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 50
gender: F
|
|
| Sample_geo_accession | GSM1126911
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126911/suppl/GSM1126911_DM_315.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126912 | GPL570 |
|
DM Donor [DM_327]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 69
gender: F
|
|
| Sample_geo_accession | GSM1126912
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126912/suppl/GSM1126912_DM_327.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126913 | GPL570 |
|
DM Donor [DM_328]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 73
gender: F
|
|
| Sample_geo_accession | GSM1126913
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126913/suppl/GSM1126913_DM_328.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126914 | GPL570 |
|
DM Donor [DM_334]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 50
gender: M
|
|
| Sample_geo_accession | GSM1126914
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126914/suppl/GSM1126914_DM_334.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126915 | GPL570 |
|
DM Donor [DM_354]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 58
gender: F
|
|
| Sample_geo_accession | GSM1126915
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126915/suppl/GSM1126915_DM_354.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126916 | GPL570 |
|
DM Donor [DM_366]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 50
gender: F
|
|
| Sample_geo_accession | GSM1126916
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126916/suppl/GSM1126916_DM_366.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126917 | GPL570 |
|
DM Donor [DM_369]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 58
gender: F
|
|
| Sample_geo_accession | GSM1126917
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126917/suppl/GSM1126917_DM_369.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126918 | GPL570 |
|
DM Donor [DM_392]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 50
gender: F
|
|
| Sample_geo_accession | GSM1126918
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126918/suppl/GSM1126918_DM_392.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126919 | GPL570 |
|
DM Donor [DM_392b]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 50
gender: F
|
|
| Sample_geo_accession | GSM1126919
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126919/suppl/GSM1126919_DM_392b.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126920 | GPL570 |
|
DM Donor [DM_404]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 57
gender: F
|
|
| Sample_geo_accession | GSM1126920
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126920/suppl/GSM1126920_DM_404.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126921 | GPL570 |
|
DM Donor [DM_429]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 32
gender: F
|
|
| Sample_geo_accession | GSM1126921
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126921/suppl/GSM1126921_DM_429.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126922 | GPL570 |
|
DM Donor [DM_432]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 49
gender: F
|
|
| Sample_geo_accession | GSM1126922
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126922/suppl/GSM1126922_DM_432.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126923 | GPL570 |
|
DM Donor [DM_460A]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 54
gender: M
|
|
| Sample_geo_accession | GSM1126923
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126923/suppl/GSM1126923_DM_460A.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126924 | GPL570 |
|
DM Donor [DM_460B]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 54
gender: M
|
|
| Sample_geo_accession | GSM1126924
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126924/suppl/GSM1126924_DM_460B.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126925 | GPL570 |
|
DM Donor [DM_462A]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 26
gender: F
|
|
| Sample_geo_accession | GSM1126925
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126925/suppl/GSM1126925_DM_462A.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126926 | GPL570 |
|
DM Donor [DM_462B]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 26
gender: F
|
|
| Sample_geo_accession | GSM1126926
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126926/suppl/GSM1126926_DM_462B.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126927 | GPL570 |
|
DM Donor [DM_464A]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 65
gender: F
|
|
| Sample_geo_accession | GSM1126927
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126927/suppl/GSM1126927_DM_464A.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126928 | GPL570 |
|
DM Donor [DM_464B]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 65
gender: F
|
|
| Sample_geo_accession | GSM1126928
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126928/suppl/GSM1126928_DM_464B.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126929 | GPL570 |
|
DM Donor [DM_467]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 65
gender: F
|
|
| Sample_geo_accession | GSM1126929
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126929/suppl/GSM1126929_DM_467.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126930 | GPL570 |
|
DM Donor [DM_475A]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 65
gender: M
|
|
| Sample_geo_accession | GSM1126930
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126930/suppl/GSM1126930_DM_475A.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126931 | GPL570 |
|
DM Donor [DM_475B]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 65
gender: M
|
|
| Sample_geo_accession | GSM1126931
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126931/suppl/GSM1126931_DM_475B.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126932 | GPL570 |
|
DM Donor [DM_476]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 44
gender: F
|
|
| Sample_geo_accession | GSM1126932
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126932/suppl/GSM1126932_DM_476.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126933 | GPL570 |
|
DM Donor [DM_493]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 51
gender: F
|
|
| Sample_geo_accession | GSM1126933
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126933/suppl/GSM1126933_DM_493.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126934 | GPL570 |
|
DM Donor [DM_498]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 47
gender: M
|
|
| Sample_geo_accession | GSM1126934
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126934/suppl/GSM1126934_DM_498.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126935 | GPL570 |
|
DM Donor [DM_503]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 54
gender: F
|
|
| Sample_geo_accession | GSM1126935
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126935/suppl/GSM1126935_DM_503.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126936 | GPL570 |
|
DM Donor [DM_531]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 47
gender: F
|
|
| Sample_geo_accession | GSM1126936
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126936/suppl/GSM1126936_DM_531.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126937 | GPL570 |
|
DM Donor [DM_555]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 47
gender: M
|
|
| Sample_geo_accession | GSM1126937
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126937/suppl/GSM1126937_DM_555.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126938 | GPL570 |
|
DM Donor [DM_561]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 70
gender: M
|
|
| Sample_geo_accession | GSM1126938
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126938/suppl/GSM1126938_DM_561.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126939 | GPL570 |
|
DM Donor [DM_563]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 41
gender: F
|
|
| Sample_geo_accession | GSM1126939
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126939/suppl/GSM1126939_DM_563.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126940 | GPL570 |
|
DM Donor [DM_568A]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 42
gender: M
|
|
| Sample_geo_accession | GSM1126940
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126940/suppl/GSM1126940_DM_568A.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126941 | GPL570 |
|
DM Donor [DM_568B]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 42
gender: M
|
|
| Sample_geo_accession | GSM1126941
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126941/suppl/GSM1126941_DM_568B.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126942 | GPL570 |
|
DM Donor [DM_573]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 63
gender: F
|
|
| Sample_geo_accession | GSM1126942
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126942/suppl/GSM1126942_DM_573.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126943 | GPL570 |
|
DM Donor [DM_582A]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 53
gender: F
|
|
| Sample_geo_accession | GSM1126943
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126943/suppl/GSM1126943_DM_582A.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
GSM1126944 | GPL570 |
|
DM Donor [DM_582B]
|
skin biopsy specimen_DM Donor
|
dx: DM
age: 53
gender: F
|
|
| Sample_geo_accession | GSM1126944
| | Sample_status | Public on Apr 20 2013
| | Sample_submission_date | Apr 20 2013
| | Sample_last_update_date | Apr 20 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Gene expression profiling of healthy donor and dermatomyositis patient skin biopsy specimens.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Ambion mirVana miRNA/RNA Kit extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HGU133 Plus 2.0 Array. GeneChips were washed and stained in an Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed using frma in R.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Christopher,Allen,Morehouse
| | Sample_contact_institute | Medimmune LLC
| | Sample_contact_address | One Medimmune Way
| | Sample_contact_city | Gaithersburg
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20878
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1126nnn/GSM1126944/suppl/GSM1126944_DM_582B.CEL.gz
| | Sample_series_id | GSE46239
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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