Search results for the GEO ID: GSE46302 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1128393 | GPL3921 |
|
MOLM_DMSO_Replicate1
|
MOLM-14 cell line, DMSO treated for 24 h
|
cell line: MOLM-14
treatment: DMSO
time: 24h
replicate: Replicate 1
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128393
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128393/suppl/GSM1128393_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_E01_596724.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128394 | GPL3921 |
|
MOLM_DMSO_Replicate2
|
MOLM-14 cell line, DMSO treated for 24 h
|
cell line: MOLM-14
treatment: DMSO
time: 24h
replicate: Replicate 2
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128394
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128394/suppl/GSM1128394_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_E02_596712.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128395 | GPL3921 |
|
MOLM_DMSO_Replicate3
|
MOLM-14 cell line, DMSO treated for 24 h
|
cell line: MOLM-14
treatment: DMSO
time: 24h
replicate: Replicate 3
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128395
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128395/suppl/GSM1128395_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_E03_596692.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128396 | GPL3921 |
|
MOLM_R406_Replicate1
|
MOLM-14 cell line, R406 treated for 24 h
|
cell line: MOLM-14
treatment: R406
time: 24h
replicate: Replicate 1
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128396
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128396/suppl/GSM1128396_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_E04_596672.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128397 | GPL3921 |
|
MOLM_R406_Replicate2
|
MOLM-14 cell line, R406 treated for 24 h
|
cell line: MOLM-14
treatment: R406
time: 24h
replicate: Replicate 2
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128397
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128397/suppl/GSM1128397_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_E05_596718.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128398 | GPL3921 |
|
MOLM_R406_Replicate3
|
MOLM-14 cell line, R406 treated for 24 h
|
cell line: MOLM-14
treatment: R406
time: 24h
replicate: Replicate 3
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128398
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128398/suppl/GSM1128398_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_E06_596650.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128399 | GPL3921 |
|
U937_DMSO_Replicate1
|
U937 cell line, DMSO treated for 24 h
|
cell line: U937
treatment: DMSO
time: 24h
replicate: Replicate 1
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128399
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128399/suppl/GSM1128399_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_F01_596678.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128400 | GPL3921 |
|
U937_DMSO_Replicate2
|
U937 cell line, DMSO treated for 24 h
|
cell line: U937
treatment: DMSO
time: 24h
replicate: Replicate 2
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128400
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128400/suppl/GSM1128400_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_F02_596560.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128401 | GPL3921 |
|
U937_DMSO_Replicate3
|
U937 cell line, DMSO treated for 24 h
|
cell line: U937
treatment: DMSO
time: 24h
replicate: Replicate 3
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128401
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128401/suppl/GSM1128401_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_F03_596620.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128402 | GPL3921 |
|
U937_R406_Replicate1
|
U937 cell line, R406 treated for 24 h
|
cell line: U937
treatment: R406
time: 24h
replicate: Replicate 1
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128402
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128402/suppl/GSM1128402_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_F04_596700.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128403 | GPL3921 |
|
U937_R406_Replicate2
|
U937 cell line, R406 treated for 24 h
|
cell line: U937
treatment: R406
time: 24h
replicate: Replicate 2
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128403
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128403/suppl/GSM1128403_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_F05_596714.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128404 | GPL3921 |
|
U937_R406_Replicate3
|
U937 cell line, R406 treated for 24 h
|
cell line: U937
treatment: R406
time: 24h
replicate: Replicate 3
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128404
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128404/suppl/GSM1128404_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_F06_596646.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128405 | GPL3921 |
|
HL60_DMSO_Replicate1
|
HL-60 cell line, DMSO treated for 24 h
|
cell line: HL-60
treatment: DMSO
time: 24h
replicate: Replicate 1
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128405
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128405/suppl/GSM1128405_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_G01_596596.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128406 | GPL3921 |
|
HL60_DMSO_Replicate2
|
HL-60 cell line, DMSO treated for 24 h
|
cell line: HL-60
treatment: DMSO
time: 24h
replicate: Replicate 2
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128406
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128406/suppl/GSM1128406_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_G02_596552.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128407 | GPL3921 |
|
HL60_DMSO_Replicate3
|
HL-60 cell line, DMSO treated for 24 h
|
cell line: HL-60
treatment: DMSO
time: 24h
replicate: Replicate 3
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128407
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128407/suppl/GSM1128407_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_G03_596582.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128408 | GPL3921 |
|
HL60_R406_Replicate1
|
HL-60 cell line, R406 treated for 24 h
|
cell line: HL-60
treatment: R406
time: 24h
replicate: Replicate 1
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128408
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128408/suppl/GSM1128408_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_G04_596710.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128409 | GPL3921 |
|
HL60_R406_Replicate2
|
HL-60 cell line, R406 treated for 24 h
|
cell line: HL-60
treatment: R406
time: 24h
replicate: Replicate 2
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128409
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128409/suppl/GSM1128409_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_G05_596564.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128410 | GPL3921 |
|
HL60_R406_Replicate3
|
HL-60 cell line, R406 treated for 24 h
|
cell line: HL-60
treatment: R406
time: 24h
replicate: Replicate 3
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128410
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128410/suppl/GSM1128410_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_G06_596556.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128411 | GPL3921 |
|
KG1_24H_DMSO_Replicate1
|
KG-1 cell line, DMSO treated for 24 h
|
cell line: KG-1
treatment: DMSO
time: 24h
replicate: Replicate 1
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128411
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128411/suppl/GSM1128411_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_H01_596624.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128412 | GPL3921 |
|
KG1_24H_DMSO_Replicate2
|
KG-1 cell line, DMSO treated for 24 h
|
cell line: KG-1
treatment: DMSO
time: 24h
replicate: Replicate 2
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128412
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128412/suppl/GSM1128412_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_H02_596606.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128413 | GPL3921 |
|
KG1_24H_DMSO_Replicate3
|
KG-1 cell line, DMSO treated for 24 h
|
cell line: KG-1
treatment: DMSO
time: 24h
replicate: Replicate 3
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128413
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128413/suppl/GSM1128413_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_H03_596636.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128414 | GPL3921 |
|
KG1_24H_R406_Replicate1
|
KG-1 cell line, R406 treated for 24 h
|
cell line: KG-1
treatment: R406
time: 24h
replicate: Replicate 1
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128414
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128414/suppl/GSM1128414_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_H04_596658.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128415 | GPL3921 |
|
KG1_24H_R406_Replicate2
|
KG-1 cell line, R406 treated for 24 h
|
cell line: KG-1
treatment: R406
time: 24h
replicate: Replicate 2
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128415
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128415/suppl/GSM1128415_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_H05_596736.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
GSM1128416 | GPL3921 |
|
KG1_24H_R406_Replicate3
|
KG-1 cell line, R406 treated for 24 h
|
cell line: KG-1
treatment: R406
time: 24h
replicate: Replicate 3
|
The samples were profiled using the HT U133A Gene Expression Arrays (Affymetrix) at the Broad Institute of MIT and Harvard (Cambridge, MA, USA).
|
Sample_geo_accession | GSM1128416
| Sample_status | Public on Apr 24 2013
| Sample_submission_date | Apr 23 2013
| Sample_last_update_date | Apr 24 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | MOLM-14, U937, HL-60 and KG-1 cells were treated in triplicate with either DMSO or R406 4μM for 24 hours.
| Sample_growth_protocol_ch1 | Cells were treated with R406 or matched vehicle control for 24 hours in liquid culture. After 24 hours, an equal number of cells were plated at 1:10 (vol/vol) in MethoCult GF+H4435 methylcellulose (StemCell Technologies, #04445) with 1% penicillin-streptomycin and appropriate drug treatment. All plates were incubated at 37 °C and 5% CO2 and colony numbers counted 8–17 days later.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted using Qiagen Rneasy Mini Kit (74104)
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotin
| Sample_hyb_protocol | GeneChip® Hybridization Control Kit (Affymetrix, P/N 900454)
| Sample_scan_protocol | Affymetrix GeneChip Scanner 7G
| Sample_data_processing | Data were extracted from the CEL files and preprocessed through the ExpressionFileCreator module implemented in GenePattern 3.5.0 software platform (Broad Institute, http://www.broadinstitute.org/cancer/software/genepattern/), by applying RMA and the quantile normalization procedures.
| Sample_platform_id | GPL3921
| Sample_contact_name | Gabriela,,Alexe
| Sample_contact_email | galexe@broadinstitute.org
| Sample_contact_department | Computational Biology and Bioinformatics
| Sample_contact_institute | Broad Institute
| Sample_contact_address | 7 Cambridge Center
| Sample_contact_city | Cambridge
| Sample_contact_state | MA
| Sample_contact_zip/postal_code | 02142
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1128nnn/GSM1128416/suppl/GSM1128416_CREME_p_KimSteg_June10_96HT_HT_HG-U133A_96-HTA_H06_596566.CEL.gz
| Sample_series_id | GSE46302
| Sample_data_row_count | 22277
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|