Search results for the GEO ID: GSE46500  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1131327 | GPL1261 |
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VCN_P14
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VCN from P14 mice
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strain/background: C57BL/6J
gender: male
age: P14
tissue: ventral cochlear nucleus
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NM_P14_VCN
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| Sample_geo_accession | GSM1131327
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Apr 30 2013
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tissues were dissected in an ice cold, oxygenated bicarbonate buffered solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from the different mouse brainstem regions were extracted using RNeasy mini kit (Qiagen). All RNA samples were DNase-treated and quantified on a NanoDrop spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The tissue from six and three male animals was pooled for the analysis at P3 and at P14, respectively. For all samples described, 20 ng of total RNA was used and were amplified using a WT ovation Pico RNA amplification (Nugen, CA, USA).
| | Sample_hyb_protocol | Affymetrix microarrays 430 2.0 arrays were hybridized with 5 micrograms of labeled, amplified cDNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol FS450_0001).
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Gene level normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003) for each experiment separately.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Michalski
| | Sample_contact_email | nicolas.michalski@pasteur.fr
| | Sample_contact_laboratory | LSYM
| | Sample_contact_department | BMI
| | Sample_contact_institute | EPFL
| | Sample_contact_address | AI 2104 (Bâtiment AI) Station 19
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1131nnn/GSM1131327/suppl/GSM1131327_NM_P14_VCN.CEL.gz
| | Sample_series_id | GSE46500
| | Sample_data_row_count | 45101
| | |
|
GSM1131328 | GPL1261 |
|
LSO_P14
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LSO from P14 mice
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strain/background: C57BL/6J
gender: male
age: P14
tissue: lateral superior olive
|
NM_P14_LSO
|
| Sample_geo_accession | GSM1131328
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Apr 30 2013
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tissues were dissected in an ice cold, oxygenated bicarbonate buffered solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from the different mouse brainstem regions were extracted using RNeasy mini kit (Qiagen). All RNA samples were DNase-treated and quantified on a NanoDrop spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The tissue from six and three male animals was pooled for the analysis at P3 and at P14, respectively. For all samples described, 20 ng of total RNA was used and were amplified using a WT ovation Pico RNA amplification (Nugen, CA, USA).
| | Sample_hyb_protocol | Affymetrix microarrays 430 2.0 arrays were hybridized with 5 micrograms of labeled, amplified cDNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol FS450_0001).
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Gene level normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003) for each experiment separately.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Michalski
| | Sample_contact_email | nicolas.michalski@pasteur.fr
| | Sample_contact_laboratory | LSYM
| | Sample_contact_department | BMI
| | Sample_contact_institute | EPFL
| | Sample_contact_address | AI 2104 (Bâtiment AI) Station 19
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1131nnn/GSM1131328/suppl/GSM1131328_NM_P14_LSO.CEL.gz
| | Sample_series_id | GSE46500
| | Sample_data_row_count | 45101
| | |
|
GSM1131329 | GPL1261 |
|
MNTB_P14
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MNTB from P14 mice
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strain/background: C57BL/6J
gender: male
age: P14
tissue: medial nucleus of the trapezoid body
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NM_P14_MNTB
|
| Sample_geo_accession | GSM1131329
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Apr 30 2013
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tissues were dissected in an ice cold, oxygenated bicarbonate buffered solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from the different mouse brainstem regions were extracted using RNeasy mini kit (Qiagen). All RNA samples were DNase-treated and quantified on a NanoDrop spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The tissue from six and three male animals was pooled for the analysis at P3 and at P14, respectively. For all samples described, 20 ng of total RNA was used and were amplified using a WT ovation Pico RNA amplification (Nugen, CA, USA).
| | Sample_hyb_protocol | Affymetrix microarrays 430 2.0 arrays were hybridized with 5 micrograms of labeled, amplified cDNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol FS450_0001).
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Gene level normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003) for each experiment separately.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Michalski
| | Sample_contact_email | nicolas.michalski@pasteur.fr
| | Sample_contact_laboratory | LSYM
| | Sample_contact_department | BMI
| | Sample_contact_institute | EPFL
| | Sample_contact_address | AI 2104 (Bâtiment AI) Station 19
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1131nnn/GSM1131329/suppl/GSM1131329_NM_P14_MNTB.CEL.gz
| | Sample_series_id | GSE46500
| | Sample_data_row_count | 45101
| | |
|
GSM1131330 | GPL1261 |
|
VCN_P3
|
VCN from P3 mice
|
strain/background: C57BL/6J
gender: male
age: P3
tissue: ventral cochlear nucleus
|
NM_P3_VCN
|
| Sample_geo_accession | GSM1131330
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Apr 30 2013
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tissues were dissected in an ice cold, oxygenated bicarbonate buffered solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from the different mouse brainstem regions were extracted using RNeasy mini kit (Qiagen). All RNA samples were DNase-treated and quantified on a NanoDrop spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The tissue from six and three male animals was pooled for the analysis at P3 and at P14, respectively. For all samples described, 20 ng of total RNA was used and were amplified using a WT ovation Pico RNA amplification (Nugen, CA, USA).
| | Sample_hyb_protocol | Affymetrix microarrays 430 2.0 arrays were hybridized with 5 micrograms of labeled, amplified cDNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol FS450_0001).
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Gene level normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003) for each experiment separately.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Michalski
| | Sample_contact_email | nicolas.michalski@pasteur.fr
| | Sample_contact_laboratory | LSYM
| | Sample_contact_department | BMI
| | Sample_contact_institute | EPFL
| | Sample_contact_address | AI 2104 (Bâtiment AI) Station 19
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1131nnn/GSM1131330/suppl/GSM1131330_NM_P3_VCN.CEL.gz
| | Sample_series_id | GSE46500
| | Sample_data_row_count | 45101
| | |
|
GSM1131331 | GPL1261 |
|
LSO_P3
|
LSO from P3 mice
|
strain/background: C57BL/6J
gender: male
age: P3
tissue: lateral superior olive
|
NM_P3_LSO
|
| Sample_geo_accession | GSM1131331
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Apr 30 2013
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tissues were dissected in an ice cold, oxygenated bicarbonate buffered solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from the different mouse brainstem regions were extracted using RNeasy mini kit (Qiagen). All RNA samples were DNase-treated and quantified on a NanoDrop spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The tissue from six and three male animals was pooled for the analysis at P3 and at P14, respectively. For all samples described, 20 ng of total RNA was used and were amplified using a WT ovation Pico RNA amplification (Nugen, CA, USA).
| | Sample_hyb_protocol | Affymetrix microarrays 430 2.0 arrays were hybridized with 5 micrograms of labeled, amplified cDNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol FS450_0001).
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Gene level normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003) for each experiment separately.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Michalski
| | Sample_contact_email | nicolas.michalski@pasteur.fr
| | Sample_contact_laboratory | LSYM
| | Sample_contact_department | BMI
| | Sample_contact_institute | EPFL
| | Sample_contact_address | AI 2104 (Bâtiment AI) Station 19
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1131nnn/GSM1131331/suppl/GSM1131331_NM_P3_LSO.CEL.gz
| | Sample_series_id | GSE46500
| | Sample_data_row_count | 45101
| | |
|
GSM1131332 | GPL1261 |
|
MNTB_P3
|
MNTB from P3 mice
|
strain/background: C57BL/6J
gender: male
age: P3
tissue: medial nucleus of the trapezoid body
|
NM_P3_MNTB
|
| Sample_geo_accession | GSM1131332
| | Sample_status | Public on May 01 2013
| | Sample_submission_date | Apr 30 2013
| | Sample_last_update_date | May 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Tissues were dissected in an ice cold, oxygenated bicarbonate buffered solution.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from the different mouse brainstem regions were extracted using RNeasy mini kit (Qiagen). All RNA samples were DNase-treated and quantified on a NanoDrop spectrophotometer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The tissue from six and three male animals was pooled for the analysis at P3 and at P14, respectively. For all samples described, 20 ng of total RNA was used and were amplified using a WT ovation Pico RNA amplification (Nugen, CA, USA).
| | Sample_hyb_protocol | Affymetrix microarrays 430 2.0 arrays were hybridized with 5 micrograms of labeled, amplified cDNA , washed, stained and scanned according to the protocol described in Affymetrix GeneChip® Expression Analysis Manual (Fluidics protocol FS450_0001).
| | Sample_scan_protocol | Scanning was done on an Affymetrix GeneChip Scanner 7G.
| | Sample_data_processing | Gene level normalized expression signals were calculated from Affymetrix CEL files using RMA (Irizarry et al., 2003) for each experiment separately.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Nicolas,,Michalski
| | Sample_contact_email | nicolas.michalski@pasteur.fr
| | Sample_contact_laboratory | LSYM
| | Sample_contact_department | BMI
| | Sample_contact_institute | EPFL
| | Sample_contact_address | AI 2104 (Bâtiment AI) Station 19
| | Sample_contact_city | Lausanne
| | Sample_contact_zip/postal_code | CH-1015
| | Sample_contact_country | Switzerland
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1131nnn/GSM1131332/suppl/GSM1131332_NM_P3_MNTB.CEL.gz
| | Sample_series_id | GSE46500
| | Sample_data_row_count | 45101
| | |
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