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Search results for the GEO ID: GSE46724

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GSM ID

GPL ID

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Title

Source name

Description

Characteristics

GSM1136144

GPL1261

adult Myeloerythroid Progenitors (MP) ICN2 negative replicate 1

Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

gender: female age: 6 weeks genotype: Mx1-cre+ cell type: Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

1 weeks after last polyIC injection

Sample_geo_accession	GSM1136144
Sample_status	Public on Jul 01 2013
Sample_submission_date	May 08 2013
Sample_last_update_date	Jul 01 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	6 weeks old Mx1-cre+ and Rosa-lsl-ICN2 Mx1-cre+ littermate were injected 3 times with polyIC (20mcg/g of body weight) every other day. Mice were sacrificed and analyzed 1 week after last injection
Sample_growth_protocol_ch1	n/a
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
Sample_label_ch1	biotin
Sample_label_protocol_ch1	5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
Sample_hyb_protocol	3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
Sample_scan_protocol	Affymetrix 7G GeneArray scanner
Sample_data_processing	Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
Sample_platform_id	GPL1261
Sample_contact_name	Camille,,Lobry
Sample_contact_email	camille.lobry@nyumc.org
Sample_contact_laboratory	Aifantis
Sample_contact_department	Cancer Institute/Pathology
Sample_contact_institute	NYULMC
Sample_contact_address	550 First Avenue
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10016
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1136nnn/GSM1136144/suppl/GSM1136144_adult_MP_ICN2neg_rep1.CEL.gz
Sample_series_id	GSE46724
Sample_series_id	GSE46726
Sample_data_row_count	45101

GSM1136145

GPL1261

adult Myeloerythroid Progenitors (MP) ICN2 negative replicate 2

Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

gender: female age: 6 weeks genotype: Mx1-cre+ cell type: Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

1 weeks after last polyIC injection

Sample_geo_accession	GSM1136145
Sample_status	Public on Jul 01 2013
Sample_submission_date	May 08 2013
Sample_last_update_date	Jul 01 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	6 weeks old Mx1-cre+ and Rosa-lsl-ICN2 Mx1-cre+ littermate were injected 3 times with polyIC (20mcg/g of body weight) every other day. Mice were sacrificed and analyzed 1 week after last injection
Sample_growth_protocol_ch1	n/a
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
Sample_label_ch1	biotin
Sample_label_protocol_ch1	5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
Sample_hyb_protocol	3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
Sample_scan_protocol	Affymetrix 7G GeneArray scanner
Sample_data_processing	Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
Sample_platform_id	GPL1261
Sample_contact_name	Camille,,Lobry
Sample_contact_email	camille.lobry@nyumc.org
Sample_contact_laboratory	Aifantis
Sample_contact_department	Cancer Institute/Pathology
Sample_contact_institute	NYULMC
Sample_contact_address	550 First Avenue
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10016
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1136nnn/GSM1136145/suppl/GSM1136145_adult_MP_ICN2neg_rep2.CEL.gz
Sample_series_id	GSE46724
Sample_series_id	GSE46726
Sample_data_row_count	45101

GSM1136146

GPL1261

adult Myeloerythroid Progenitors (MP) ICN2 negative replicate 3

Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

gender: female age: 6 weeks genotype: Mx1-cre+ cell type: Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

1 weeks after last polyIC injection

Sample_geo_accession	GSM1136146
Sample_status	Public on Jul 01 2013
Sample_submission_date	May 08 2013
Sample_last_update_date	Jul 01 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	6 weeks old Mx1-cre+ and Rosa-lsl-ICN2 Mx1-cre+ littermate were injected 3 times with polyIC (20mcg/g of body weight) every other day. Mice were sacrificed and analyzed 1 week after last injection
Sample_growth_protocol_ch1	n/a
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
Sample_label_ch1	biotin
Sample_label_protocol_ch1	5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
Sample_hyb_protocol	3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
Sample_scan_protocol	Affymetrix 7G GeneArray scanner
Sample_data_processing	Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
Sample_platform_id	GPL1261
Sample_contact_name	Camille,,Lobry
Sample_contact_email	camille.lobry@nyumc.org
Sample_contact_laboratory	Aifantis
Sample_contact_department	Cancer Institute/Pathology
Sample_contact_institute	NYULMC
Sample_contact_address	550 First Avenue
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10016
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1136nnn/GSM1136146/suppl/GSM1136146_adult_MP_ICN2neg_rep3.CEL.gz
Sample_series_id	GSE46724
Sample_series_id	GSE46726
Sample_data_row_count	45101

GSM1136147

GPL1261

adult Myeloerythroid Progenitors (MP) ICN2 positive replicate 1

Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

gender: male age: 6 weeks genotype: Rosa-lsl-ICN2 Mx1-cre+ cell type: Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

1 weeks after last polyIC injection

Sample_geo_accession	GSM1136147
Sample_status	Public on Jul 01 2013
Sample_submission_date	May 08 2013
Sample_last_update_date	Jul 01 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	6 weeks old Mx1-cre+ and Rosa-lsl-ICN2 Mx1-cre+ littermate were injected 3 times with polyIC (20mcg/g of body weight) every other day. Mice were sacrificed and analyzed 1 week after last injection
Sample_growth_protocol_ch1	n/a
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
Sample_label_ch1	biotin
Sample_label_protocol_ch1	5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
Sample_hyb_protocol	3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
Sample_scan_protocol	Affymetrix 7G GeneArray scanner
Sample_data_processing	Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
Sample_platform_id	GPL1261
Sample_contact_name	Camille,,Lobry
Sample_contact_email	camille.lobry@nyumc.org
Sample_contact_laboratory	Aifantis
Sample_contact_department	Cancer Institute/Pathology
Sample_contact_institute	NYULMC
Sample_contact_address	550 First Avenue
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10016
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1136nnn/GSM1136147/suppl/GSM1136147_adult_MP_ICN2pos_rep1.CEL.gz
Sample_series_id	GSE46724
Sample_series_id	GSE46726
Sample_data_row_count	45101

GSM1136148

GPL1261

adult Myeloerythroid Progenitors (MP) ICN2 positive replicate 2

Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

gender: male age: 6 weeks genotype: Rosa-lsl-ICN2 Mx1-cre+ cell type: Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

1 weeks after last polyIC injection

Sample_geo_accession	GSM1136148
Sample_status	Public on Jul 01 2013
Sample_submission_date	May 08 2013
Sample_last_update_date	Jul 01 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	6 weeks old Mx1-cre+ and Rosa-lsl-ICN2 Mx1-cre+ littermate were injected 3 times with polyIC (20mcg/g of body weight) every other day. Mice were sacrificed and analyzed 1 week after last injection
Sample_growth_protocol_ch1	n/a
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
Sample_label_ch1	biotin
Sample_label_protocol_ch1	5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
Sample_hyb_protocol	3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
Sample_scan_protocol	Affymetrix 7G GeneArray scanner
Sample_data_processing	Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
Sample_platform_id	GPL1261
Sample_contact_name	Camille,,Lobry
Sample_contact_email	camille.lobry@nyumc.org
Sample_contact_laboratory	Aifantis
Sample_contact_department	Cancer Institute/Pathology
Sample_contact_institute	NYULMC
Sample_contact_address	550 First Avenue
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10016
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1136nnn/GSM1136148/suppl/GSM1136148_adult_MP_ICN2pos_rep2.CEL.gz
Sample_series_id	GSE46724
Sample_series_id	GSE46726
Sample_data_row_count	45101

GSM1136149

GPL1261

adult Myeloerythroid Progenitors (MP) ICN2 positive replicate 3

Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

gender: male age: 6 weeks genotype: Rosa-lsl-ICN2 Mx1-cre+ cell type: Lineage negative, cKit+, Sca1- bone marrow cells from 6 weeks old mouse

1 weeks after last polyIC injection

Sample_geo_accession	GSM1136149
Sample_status	Public on Jul 01 2013
Sample_submission_date	May 08 2013
Sample_last_update_date	Jul 01 2013
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_treatment_protocol_ch1	6 weeks old Mx1-cre+ and Rosa-lsl-ICN2 Mx1-cre+ littermate were injected 3 times with polyIC (20mcg/g of body weight) every other day. Mice were sacrificed and analyzed 1 week after last injection
Sample_growth_protocol_ch1	n/a
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
Sample_label_ch1	biotin
Sample_label_protocol_ch1	5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
Sample_hyb_protocol	3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
Sample_scan_protocol	Affymetrix 7G GeneArray scanner
Sample_data_processing	Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
Sample_platform_id	GPL1261
Sample_contact_name	Camille,,Lobry
Sample_contact_email	camille.lobry@nyumc.org
Sample_contact_laboratory	Aifantis
Sample_contact_department	Cancer Institute/Pathology
Sample_contact_institute	NYULMC
Sample_contact_address	550 First Avenue
Sample_contact_city	New York
Sample_contact_state	NY
Sample_contact_zip/postal_code	10016
Sample_contact_country	USA
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1136nnn/GSM1136149/suppl/GSM1136149_adult_MP_ICN2pos_rep3.CEL.gz
Sample_series_id	GSE46724
Sample_series_id	GSE46726
Sample_data_row_count	45101

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