Search results for the GEO ID: GSE46797  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1138496 | GPL1261 |
|
Notch1 T-ALL MycGFP negative replicate 1
|
Notch1-deltaE+, CD25+, mycGFP- splenocytes 4 weeks post-transplant
|
strain: C57BL/6
tissue: Spleen
age: 12 weeks
genotype: Notch1[delta]E mycGFP
|
Murine T-ALL
|
| Sample_geo_accession | GSM1138496
| | Sample_status | Public on May 10 2013
| | Sample_submission_date | May 09 2013
| | Sample_last_update_date | May 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total mononuclear cells were isolated from congenic recipients and sorted on the basis of mCherry, GFP
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bryan,,King
| | Sample_contact_email | bryan.king@nyumc.org
| | Sample_contact_laboratory | Iannis Aifantis Lab
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | NYU School of Medicine
| | Sample_contact_address | 550 1st Ave
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1138nnn/GSM1138496/suppl/GSM1138496_T_ALL_mycGFPneg_rep1.CEL.gz
| | Sample_series_id | GSE46797
| | Sample_data_row_count | 45101
| | |
|
GSM1138497 | GPL1261 |
|
Notch1 T-ALL MycGFP negative replicate 2
|
Notch1-deltaE+, CD25+, mycGFP- splenocytes 4 weeks post-transplant
|
strain: C57BL/6
tissue: Spleen
age: 12 weeks
genotype: Notch1[delta]E mycGFP
|
Murine T-ALL
|
| Sample_geo_accession | GSM1138497
| | Sample_status | Public on May 10 2013
| | Sample_submission_date | May 09 2013
| | Sample_last_update_date | May 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total mononuclear cells were isolated from congenic recipients and sorted on the basis of mCherry, GFP
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bryan,,King
| | Sample_contact_email | bryan.king@nyumc.org
| | Sample_contact_laboratory | Iannis Aifantis Lab
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | NYU School of Medicine
| | Sample_contact_address | 550 1st Ave
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1138nnn/GSM1138497/suppl/GSM1138497_T_ALL_mycGFPneg_rep2.CEL.gz
| | Sample_series_id | GSE46797
| | Sample_data_row_count | 45101
| | |
|
GSM1138498 | GPL1261 |
|
Notch1 T-ALL MycGFP negative replicate 3
|
Notch1-deltaE+, CD25+, mycGFP- splenocytes 4 weeks post-transplant
|
strain: C57BL/6
tissue: Spleen
age: 12 weeks
genotype: Notch1[delta]E mycGFP
|
Murine T-ALL
|
| Sample_geo_accession | GSM1138498
| | Sample_status | Public on May 10 2013
| | Sample_submission_date | May 09 2013
| | Sample_last_update_date | May 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total mononuclear cells were isolated from congenic recipients and sorted on the basis of mCherry, GFP
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bryan,,King
| | Sample_contact_email | bryan.king@nyumc.org
| | Sample_contact_laboratory | Iannis Aifantis Lab
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | NYU School of Medicine
| | Sample_contact_address | 550 1st Ave
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1138nnn/GSM1138498/suppl/GSM1138498_T_ALL_mycGFPneg_rep3.CEL.gz
| | Sample_series_id | GSE46797
| | Sample_data_row_count | 45101
| | |
|
GSM1138499 | GPL1261 |
|
Notch1 T-ALL MycGFP positive replicate 1
|
Notch1-deltaE+, CD25+, mycGFP+ splenocytes, 4 weeks post transplant
|
strain: C57BL/6
tissue: Spleen
age: 12 weeks
genotype: Notch1[delta]E mycGFP
|
Murine T-ALL
|
| Sample_geo_accession | GSM1138499
| | Sample_status | Public on May 10 2013
| | Sample_submission_date | May 09 2013
| | Sample_last_update_date | May 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total mononuclear cells were isolated from congenic recipients and sorted on the basis of mCherry, GFP
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bryan,,King
| | Sample_contact_email | bryan.king@nyumc.org
| | Sample_contact_laboratory | Iannis Aifantis Lab
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | NYU School of Medicine
| | Sample_contact_address | 550 1st Ave
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1138nnn/GSM1138499/suppl/GSM1138499_T_ALL_mycGFPpos_rep1.CEL.gz
| | Sample_series_id | GSE46797
| | Sample_data_row_count | 45101
| | |
|
GSM1138500 | GPL1261 |
|
Notch1 T-ALL MycGFP positive replicate 2
|
Notch1-deltaE+, CD25+, mycGFP+ splenocytes, 4 weeks post transplant
|
strain: C57BL/6
tissue: Spleen
age: 12 weeks
genotype: Notch1[delta]E mycGFP
|
Murine T-ALL
|
| Sample_geo_accession | GSM1138500
| | Sample_status | Public on May 10 2013
| | Sample_submission_date | May 09 2013
| | Sample_last_update_date | May 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total mononuclear cells were isolated from congenic recipients and sorted on the basis of mCherry, GFP
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bryan,,King
| | Sample_contact_email | bryan.king@nyumc.org
| | Sample_contact_laboratory | Iannis Aifantis Lab
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | NYU School of Medicine
| | Sample_contact_address | 550 1st Ave
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1138nnn/GSM1138500/suppl/GSM1138500_T_ALL_mycGFPpos_rep2.CEL.gz
| | Sample_series_id | GSE46797
| | Sample_data_row_count | 45101
| | |
|
GSM1138501 | GPL1261 |
|
Notch1 T-ALL MycGFP positive replicate 3
|
Notch1-deltaE+, CD25+, mycGFP+ splenocytes, 4 weeks post transplant
|
strain: C57BL/6
tissue: Spleen
age: 12 weeks
genotype: Notch1[delta]E mycGFP
|
Murine T-ALL
|
| Sample_geo_accession | GSM1138501
| | Sample_status | Public on May 10 2013
| | Sample_submission_date | May 09 2013
| | Sample_last_update_date | May 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Total mononuclear cells were isolated from congenic recipients and sorted on the basis of mCherry, GFP
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNEasy Plus mini Kit was used to extract total cellular RNA according to the manufacturer's protocol, and the RNA was amplified and converted into cDNA using the Ovation Amplification v2 and Biotin cDNA Biotin systems
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ng total RNA was amplified by Nugen Ovation RNA amplification system V2 and the resulting cDNA biotin-labeled using the FL-Ovation™ cDNA Biotin Module V2
| | Sample_hyb_protocol | 3.75 mcg of biotin-labeled cDNA were hybridized for 16 hrs onto the GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix)
| | Sample_scan_protocol | Affymetrix 7G GeneArray scanner
| | Sample_data_processing | Feature intensity was extracted by GeneChip Operating System as CEL files. The probe-level analysis of the CEL files was performed by the RMA algorithm using Genespring GX program. No further adjustments were made to the data in the table.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bryan,,King
| | Sample_contact_email | bryan.king@nyumc.org
| | Sample_contact_laboratory | Iannis Aifantis Lab
| | Sample_contact_department | Cancer Institute
| | Sample_contact_institute | NYU School of Medicine
| | Sample_contact_address | 550 1st Ave
| | Sample_contact_city | New York
| | Sample_contact_zip/postal_code | 10016
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1138nnn/GSM1138501/suppl/GSM1138501_T_ALL_mycGFPpos_rep3.CEL.gz
| | Sample_series_id | GSE46797
| | Sample_data_row_count | 45101
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
