Search results for the GEO ID: GSE46942  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1141664 | GPL1261 |
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CD8+ wild-type
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CD8+ wild-type
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strain: C57BL/6
cell type: OT-I CD8+ T cells
genotype: wild-type CD27hi KLRG1lo
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Gene expression from wild-type CD27hi KLRG1lo OT-I CD8+ T cells
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| Sample_geo_accession | GSM1141664
| | Sample_status | Public on May 16 2013
| | Sample_submission_date | May 15 2013
| | Sample_last_update_date | May 16 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | miRNeasy kit extraction of total RNA was performed according to the manufacturer's instructions (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse 430 2.0 genome arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | Arrays were scanned using GeneChip Affymetrix scanner 3000 7G
| | Sample_data_processing | The data was analyzed using the RMA and limma methods to assess differential expression
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Willey,,Liao
| | Sample_contact_laboratory | Zhang
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | Cold Spring Harbor Laboratory
| | Sample_contact_address | 1 Bungtown Road
| | Sample_contact_city | Cold Spring Harbor
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 11724
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1141nnn/GSM1141664/suppl/GSM1141664_CD8_WT.CEL.gz
| | Sample_series_id | GSE46942
| | Sample_series_id | GSE46944
| | Sample_data_row_count | 45101
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GSM1141665 | GPL1261 |
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CD8+ Foxo1fl/fl
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CD8+ FOXO1fl/fl
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strain: C57BL/6
cell type: OT-I CD8+ T cells
genotype: GzmB-cre Foxo1fl/fl CD27hi KLRG1lo
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Gene expression from GzmB-cre Foxo1fl/fl CD27hi KLRG1lo OT-I CD8+ T cells
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| Sample_geo_accession | GSM1141665
| | Sample_status | Public on May 16 2013
| | Sample_submission_date | May 15 2013
| | Sample_last_update_date | May 16 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | miRNeasy kit extraction of total RNA was performed according to the manufacturer's instructions (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip mouse 430 2.0 genome arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450
| | Sample_scan_protocol | Arrays were scanned using GeneChip Affymetrix scanner 3000 7G
| | Sample_data_processing | The data was analyzed using the RMA and limma methods to assess differential expression
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Willey,,Liao
| | Sample_contact_laboratory | Zhang
| | Sample_contact_department | Computational Biology
| | Sample_contact_institute | Cold Spring Harbor Laboratory
| | Sample_contact_address | 1 Bungtown Road
| | Sample_contact_city | Cold Spring Harbor
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 11724
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1141nnn/GSM1141665/suppl/GSM1141665_CD8_FOXO1floxed.CEL.gz
| | Sample_series_id | GSE46942
| | Sample_series_id | GSE46944
| | Sample_data_row_count | 45101
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