Search results for the GEO ID: GSE47402  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1148917 | GPL1261 |
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Runx1-KO, biological rep1
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Runx1-deficient MLL-ENL cells
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genotype: Runx1-KO
strain: C57BL/6
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Gene expression data from Runx1-deficient MLL-ENL cells
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| Sample_geo_accession | GSM1148917
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | May 28 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Rneasy mini kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | labeling of fragmented cDNA was carried out using the NuGen Ovation Biotin labeling system (NuGEN Technologies).
| | Sample_hyb_protocol | Labeled probes were hybridized to the Mouse Genome 430 2.0 Array (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned with a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Expression data were extracted from image files produced on GeneChip Operating software 1.0 (Affymetrix). Normalization and expression value calculation were performed using DNA-Chip Analyzer (www.dchip.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susumu,,Goyama
| | Sample_contact_email | sgou-tky@umin.net
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Avenue
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | Ohio
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1148nnn/GSM1148917/suppl/GSM1148917_Runx1-KO_1.CEL.gz
| | Sample_series_id | GSE47402
| | Sample_data_row_count | 45101
| | |
|
GSM1148918 | GPL1261 |
|
Runx1-KO, biological rep2
|
Runx1-deficient MLL-ENL cells
|
genotype: Runx1-KO
strain: C57BL/6
|
Gene expression data from Runx1-deficient MLL-ENL cells
|
| Sample_geo_accession | GSM1148918
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | May 28 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Rneasy mini kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | labeling of fragmented cDNA was carried out using the NuGen Ovation Biotin labeling system (NuGEN Technologies).
| | Sample_hyb_protocol | Labeled probes were hybridized to the Mouse Genome 430 2.0 Array (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned with a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Expression data were extracted from image files produced on GeneChip Operating software 1.0 (Affymetrix). Normalization and expression value calculation were performed using DNA-Chip Analyzer (www.dchip.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susumu,,Goyama
| | Sample_contact_email | sgou-tky@umin.net
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Avenue
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | Ohio
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1148nnn/GSM1148918/suppl/GSM1148918_Runx1-KO_2.CEL.gz
| | Sample_series_id | GSE47402
| | Sample_data_row_count | 45101
| | |
|
GSM1148919 | GPL1261 |
|
Runx1-KO, biological rep3
|
Runx1-deficient MLL-ENL cells
|
genotype: Runx1-KO
strain: C57BL/6
|
Gene expression data from Runx1-deficient MLL-ENL cells
|
| Sample_geo_accession | GSM1148919
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | May 28 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Rneasy mini kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | labeling of fragmented cDNA was carried out using the NuGen Ovation Biotin labeling system (NuGEN Technologies).
| | Sample_hyb_protocol | Labeled probes were hybridized to the Mouse Genome 430 2.0 Array (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned with a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Expression data were extracted from image files produced on GeneChip Operating software 1.0 (Affymetrix). Normalization and expression value calculation were performed using DNA-Chip Analyzer (www.dchip.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susumu,,Goyama
| | Sample_contact_email | sgou-tky@umin.net
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Avenue
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | Ohio
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1148nnn/GSM1148919/suppl/GSM1148919_Runx1-KO_3.CEL.gz
| | Sample_series_id | GSE47402
| | Sample_data_row_count | 45101
| | |
|
GSM1148920 | GPL1261 |
|
Control, biological rep1
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Runx1-intact MLL-ENL cells
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genotype: Runx1-intact
strain: C57BL/6
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Gene expression data from Runx1-intact MLL-ENL cells
|
| Sample_geo_accession | GSM1148920
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | May 28 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Rneasy mini kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | labeling of fragmented cDNA was carried out using the NuGen Ovation Biotin labeling system (NuGEN Technologies).
| | Sample_hyb_protocol | Labeled probes were hybridized to the Mouse Genome 430 2.0 Array (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned with a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Expression data were extracted from image files produced on GeneChip Operating software 1.0 (Affymetrix). Normalization and expression value calculation were performed using DNA-Chip Analyzer (www.dchip.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susumu,,Goyama
| | Sample_contact_email | sgou-tky@umin.net
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Avenue
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | Ohio
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1148nnn/GSM1148920/suppl/GSM1148920_Control_1.CEL.gz
| | Sample_series_id | GSE47402
| | Sample_data_row_count | 45101
| | |
|
GSM1148921 | GPL1261 |
|
Control, biological rep2
|
Runx1-intact MLL-ENL cells
|
genotype: Runx1-intact
strain: C57BL/6
|
Gene expression data from Runx1-intact MLL-ENL cells
|
| Sample_geo_accession | GSM1148921
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | May 28 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Rneasy mini kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | labeling of fragmented cDNA was carried out using the NuGen Ovation Biotin labeling system (NuGEN Technologies).
| | Sample_hyb_protocol | Labeled probes were hybridized to the Mouse Genome 430 2.0 Array (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned with a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Expression data were extracted from image files produced on GeneChip Operating software 1.0 (Affymetrix). Normalization and expression value calculation were performed using DNA-Chip Analyzer (www.dchip.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susumu,,Goyama
| | Sample_contact_email | sgou-tky@umin.net
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Avenue
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | Ohio
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1148nnn/GSM1148921/suppl/GSM1148921_Control_2.CEL.gz
| | Sample_series_id | GSE47402
| | Sample_data_row_count | 45101
| | |
|
GSM1148922 | GPL1261 |
|
Control, biological rep3
|
Runx1-intact MLL-ENL cells
|
genotype: Runx1-intact
strain: C57BL/6
|
Gene expression data from Runx1-intact MLL-ENL cells
|
| Sample_geo_accession | GSM1148922
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | May 28 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared using Rneasy mini kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | labeling of fragmented cDNA was carried out using the NuGen Ovation Biotin labeling system (NuGEN Technologies).
| | Sample_hyb_protocol | Labeled probes were hybridized to the Mouse Genome 430 2.0 Array (Affymetrix).
| | Sample_scan_protocol | GeneChips were scanned with a GeneChip Scanner 3000 7G (Affymetrix).
| | Sample_data_processing | Expression data were extracted from image files produced on GeneChip Operating software 1.0 (Affymetrix). Normalization and expression value calculation were performed using DNA-Chip Analyzer (www.dchip.org).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Susumu,,Goyama
| | Sample_contact_email | sgou-tky@umin.net
| | Sample_contact_institute | Cincinnati Children's Hospital Medical Center
| | Sample_contact_address | 3333 Burnet Avenue
| | Sample_contact_city | Cincinnati
| | Sample_contact_state | Ohio
| | Sample_contact_zip/postal_code | 45229
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1148nnn/GSM1148922/suppl/GSM1148922_Control_3.CEL.gz
| | Sample_series_id | GSE47402
| | Sample_data_row_count | 45101
| | |
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