Search results for the GEO ID: GSE47641  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1153923 | GPL570 |
|
Kasumi1_Mock_Exp1_rep1
|
Kasumi-1 cells, mock
|
cell line: Kasumi-1
transduction: mock
|
|
| Sample_geo_accession | GSM1153923
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153923/suppl/GSM1153923_Kasumi1pGCDN_mock-1_exp_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153923/suppl/GSM1153923_Kasumi1pGCDN_mock-1_exp_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153924 | GPL570 |
|
Kasumi1_Mock_Exp1_rep2
|
Kasumi-1 cells, mock
|
cell line: Kasumi-1
transduction: mock
|
|
| Sample_geo_accession | GSM1153924
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153924/suppl/GSM1153924_Kasumi1pGCDN_mock-2_exp_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153924/suppl/GSM1153924_Kasumi1pGCDN_mock-2_exp_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153925 | GPL570 |
|
Kasumi1_Mock_Exp1_rep3
|
Kasumi-1 cells, mock
|
cell line: Kasumi-1
transduction: mock
|
|
| Sample_geo_accession | GSM1153925
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153925/suppl/GSM1153925_Kasumi1pGCDN_mock-3_exp_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153925/suppl/GSM1153925_Kasumi1pGCDN_mock-3_exp_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153926 | GPL570 |
|
Kasumi1_RAD21WT_Exp1_rep1
|
Kasumi-1 cells, wild-type
|
cell line: Kasumi-1
transduction: wild-type RAD21
|
|
| Sample_geo_accession | GSM1153926
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153926/suppl/GSM1153926_Kasumi1pGCDN_RAD21-1_exp_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153926/suppl/GSM1153926_Kasumi1pGCDN_RAD21-1_exp_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153927 | GPL570 |
|
Kasumi1_RAD21WT_Exp1_rep2
|
Kasumi-1 cells, wild-type
|
cell line: Kasumi-1
transduction: wild-type RAD21
|
|
| Sample_geo_accession | GSM1153927
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153927/suppl/GSM1153927_Kasumi1pGCDN_RAD21-2_exp_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153927/suppl/GSM1153927_Kasumi1pGCDN_RAD21-2_exp_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153928 | GPL570 |
|
Kasumi1_RAD21WT_Exp1_rep3
|
Kasumi-1 cells, wild-type
|
cell line: Kasumi-1
transduction: wild-type RAD21
|
|
| Sample_geo_accession | GSM1153928
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153928/suppl/GSM1153928_Kasumi1pGCDN_RAD21-3_exp_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153928/suppl/GSM1153928_Kasumi1pGCDN_RAD21-3_exp_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153929 | GPL570 |
|
Kasumi1_Mock_Exp2_rep1
|
Kasumi-1 cells, mock
|
cell line: Kasumi-1
transduction: mock
|
|
| Sample_geo_accession | GSM1153929
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153929/suppl/GSM1153929_Kasumi_mock_11_-1_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153929/suppl/GSM1153929_Kasumi_mock_11_-1_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153930 | GPL570 |
|
Kasumi1_Mock_Exp2_rep2
|
Kasumi-1 cells, mock
|
cell line: Kasumi-1
transduction: mock
|
|
| Sample_geo_accession | GSM1153930
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153930/suppl/GSM1153930_Kasumi_mock_11_-2_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153930/suppl/GSM1153930_Kasumi_mock_11_-2_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153931 | GPL570 |
|
Kasumi1_Mock_Exp2_rep3
|
Kasumi-1 cells, mock
|
cell line: Kasumi-1
transduction: mock
|
|
| Sample_geo_accession | GSM1153931
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153931/suppl/GSM1153931_Kasumi_mock_11_-3_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153931/suppl/GSM1153931_Kasumi_mock_11_-3_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153932 | GPL570 |
|
Kasumi1_RAD21WT_Exp2_rep1
|
Kasumi-1 cells, wild-type
|
cell line: Kasumi-1
transduction: wild-type RAD21
|
|
| Sample_geo_accession | GSM1153932
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153932/suppl/GSM1153932_Kasumi_R21_1-4_-1_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153932/suppl/GSM1153932_Kasumi_R21_1-4_-1_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
| | |
|
GSM1153933 | GPL570 |
|
Kasumi1_RAD21WT_Exp2_rep2
|
Kasumi-1 cells, wild-type
|
cell line: Kasumi-1
transduction: wild-type RAD21
|
|
| Sample_geo_accession | GSM1153933
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153933/suppl/GSM1153933_Kasumi_R21_1-4_-2_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153933/suppl/GSM1153933_Kasumi_R21_1-4_-2_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
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GSM1153934 | GPL570 |
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Kasumi1_RAD21WT_Exp2_rep3
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Kasumi-1 cells, wild-type
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cell line: Kasumi-1
transduction: wild-type RAD21
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| Sample_geo_accession | GSM1153934
| | Sample_status | Public on Jul 15 2013
| | Sample_submission_date | Jun 04 2013
| | Sample_last_update_date | Jul 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | None
| | Sample_growth_protocol_ch1 | Kasumi-1 cells were retrovirally transduced with either mock or wild-type RAD21. The cells were sorted by GFP-marking using a MoFlo® FACS cell sorter (Beckman Coulter) 48 hrs after retroviral transduction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from cultured cells was isolated with the RNeasy Total RNA kit (Qiagen) using RNase-free DNase set (Qiagen) to reduce contamination of genomic DNA according to the manufacturer's protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix standard protocol.
| | Sample_hyb_protocol | Affymetrix standard protocol.
| | Sample_scan_protocol | Affymetrix standard protocol.
| | Sample_data_processing | Raw array signals were processed using dCHIP.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ayana,,Kon
| | Sample_contact_email | akon-tky@umin.ac.jp
| | Sample_contact_department | Cancer Genomics Project
| | Sample_contact_institute | The University of Tokyo
| | Sample_contact_address | Hongo 7-3-1, Bunkyo-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 113-8655
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153934/suppl/GSM1153934_Kasumi_R21_1-4_-3_HG-U133_Plus_2_.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1153nnn/GSM1153934/suppl/GSM1153934_Kasumi_R21_1-4_-3_HG-U133_Plus_2_.dcp.gz
| | Sample_series_id | GSE47641
| | Sample_series_id | GSE47684
| | Sample_data_row_count | 54639
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