Search results for the GEO ID: GSE47777  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1159579 | GPL1261 |
|
WT MEFs at passage 3_biological replicate 1
|
Mouse embryonic fibroblasts
|
strain: C57BL/6
cell type: MEFs
genotype/variation: wild type
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WT_MEF1.CEL
|
| Sample_geo_accession | GSM1159579
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | Jun 10 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | MEFs were isolated from E13.5 embryos and passaged 3 times prior to experiment plating and collection.
| | Sample_growth_protocol_ch1 | MEFs cells were passaged in DMEM supplemented with 10% FBS and pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from MEFs using RNeasy Kits (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA. RNA was reverse transcribed with T7-oligo(dT) primer and biotin-labeled
| | Sample_hyb_protocol | Four replicates of each group were prepared, labeled, and hybridized to Affymetrix mouse 430 2.0 GeneChip
| | Sample_scan_protocol | GeneChips were scanned on Affymetrix GeneChip scanner 3000
| | Sample_data_processing | Following QC checks, microarray probe level data were normalized, background adjusted, and summarized with the RMA algorithm (Robust Multichip Analysis)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Peter,F,Johnson
| | Sample_contact_email | johnsope@mail.nih.gov
| | Sample_contact_phone | 301 846-1627
| | Sample_contact_laboratory | Mouse Cancer Genetics Program
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 1050 Boyles St
| | Sample_contact_city | FREDERICK
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21702-1201
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1159nnn/GSM1159579/suppl/GSM1159579_WT_MEF1.CEL.CEL.gz
| | Sample_series_id | GSE47777
| | Sample_data_row_count | 45101
| | |
|
GSM1159580 | GPL1261 |
|
WT MEFs at passage 3_biological replicate 2
|
Mouse embryonic fibroblasts
|
strain: C57BL/6
cell type: MEFs
genotype/variation: wild type
|
WT_MEF2.CEL
|
| Sample_geo_accession | GSM1159580
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | Jun 10 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | MEFs were isolated from E13.5 embryos and passaged 3 times prior to experiment plating and collection.
| | Sample_growth_protocol_ch1 | MEFs cells were passaged in DMEM supplemented with 10% FBS and pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from MEFs using RNeasy Kits (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA. RNA was reverse transcribed with T7-oligo(dT) primer and biotin-labeled
| | Sample_hyb_protocol | Four replicates of each group were prepared, labeled, and hybridized to Affymetrix mouse 430 2.0 GeneChip
| | Sample_scan_protocol | GeneChips were scanned on Affymetrix GeneChip scanner 3000
| | Sample_data_processing | Following QC checks, microarray probe level data were normalized, background adjusted, and summarized with the RMA algorithm (Robust Multichip Analysis)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Peter,F,Johnson
| | Sample_contact_email | johnsope@mail.nih.gov
| | Sample_contact_phone | 301 846-1627
| | Sample_contact_laboratory | Mouse Cancer Genetics Program
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 1050 Boyles St
| | Sample_contact_city | FREDERICK
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21702-1201
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1159nnn/GSM1159580/suppl/GSM1159580_WT_MEF2.CEL.CEL.gz
| | Sample_series_id | GSE47777
| | Sample_data_row_count | 45101
| | |
|
GSM1159581 | GPL1261 |
|
WT MEFs at passage 3_biological replicate 3
|
Mouse embryonic fibroblasts
|
strain: C57BL/6
cell type: MEFs
genotype/variation: wild type
|
WT_MEF3.CEL
|
| Sample_geo_accession | GSM1159581
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | Jun 10 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | MEFs were isolated from E13.5 embryos and passaged 3 times prior to experiment plating and collection.
| | Sample_growth_protocol_ch1 | MEFs cells were passaged in DMEM supplemented with 10% FBS and pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from MEFs using RNeasy Kits (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA. RNA was reverse transcribed with T7-oligo(dT) primer and biotin-labeled
| | Sample_hyb_protocol | Four replicates of each group were prepared, labeled, and hybridized to Affymetrix mouse 430 2.0 GeneChip
| | Sample_scan_protocol | GeneChips were scanned on Affymetrix GeneChip scanner 3000
| | Sample_data_processing | Following QC checks, microarray probe level data were normalized, background adjusted, and summarized with the RMA algorithm (Robust Multichip Analysis)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Peter,F,Johnson
| | Sample_contact_email | johnsope@mail.nih.gov
| | Sample_contact_phone | 301 846-1627
| | Sample_contact_laboratory | Mouse Cancer Genetics Program
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 1050 Boyles St
| | Sample_contact_city | FREDERICK
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21702-1201
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1159nnn/GSM1159581/suppl/GSM1159581_WT_MEF3.CEL.CEL.gz
| | Sample_series_id | GSE47777
| | Sample_data_row_count | 45101
| | |
|
GSM1159582 | GPL1261 |
|
WT MEFs at passage 3_biological replicate 4
|
Mouse embryonic fibroblasts
|
strain: C57BL/6
cell type: MEFs
genotype/variation: wild type
|
WT_MEF4.CEL
|
| Sample_geo_accession | GSM1159582
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | Jun 10 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | MEFs were isolated from E13.5 embryos and passaged 3 times prior to experiment plating and collection.
| | Sample_growth_protocol_ch1 | MEFs cells were passaged in DMEM supplemented with 10% FBS and pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from MEFs using RNeasy Kits (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA. RNA was reverse transcribed with T7-oligo(dT) primer and biotin-labeled
| | Sample_hyb_protocol | Four replicates of each group were prepared, labeled, and hybridized to Affymetrix mouse 430 2.0 GeneChip
| | Sample_scan_protocol | GeneChips were scanned on Affymetrix GeneChip scanner 3000
| | Sample_data_processing | Following QC checks, microarray probe level data were normalized, background adjusted, and summarized with the RMA algorithm (Robust Multichip Analysis)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Peter,F,Johnson
| | Sample_contact_email | johnsope@mail.nih.gov
| | Sample_contact_phone | 301 846-1627
| | Sample_contact_laboratory | Mouse Cancer Genetics Program
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 1050 Boyles St
| | Sample_contact_city | FREDERICK
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21702-1201
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1159nnn/GSM1159582/suppl/GSM1159582_WT_MEF4.CEL.CEL.gz
| | Sample_series_id | GSE47777
| | Sample_data_row_count | 45101
| | |
|
GSM1159583 | GPL1261 |
|
Cebpg-/- MEFs at passage 3_biological replicate 1
|
Mouse embryonic fibroblasts
|
strain: C57BL/6
cell type: MEFs
genotype/variation: Cebpg-/-
|
CebpgKO_MEF1.CEL
|
| Sample_geo_accession | GSM1159583
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | Jun 10 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | MEFs were isolated from E13.5 embryos and passaged 3 times prior to experiment plating and collection.
| | Sample_growth_protocol_ch1 | MEFs cells were passaged in DMEM supplemented with 10% FBS and pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from MEFs using RNeasy Kits (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA. RNA was reverse transcribed with T7-oligo(dT) primer and biotin-labeled
| | Sample_hyb_protocol | Four replicates of each group were prepared, labeled, and hybridized to Affymetrix mouse 430 2.0 GeneChip
| | Sample_scan_protocol | GeneChips were scanned on Affymetrix GeneChip scanner 3000
| | Sample_data_processing | Following QC checks, microarray probe level data were normalized, background adjusted, and summarized with the RMA algorithm (Robust Multichip Analysis)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Peter,F,Johnson
| | Sample_contact_email | johnsope@mail.nih.gov
| | Sample_contact_phone | 301 846-1627
| | Sample_contact_laboratory | Mouse Cancer Genetics Program
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 1050 Boyles St
| | Sample_contact_city | FREDERICK
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21702-1201
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1159nnn/GSM1159583/suppl/GSM1159583_CebpgKO_MEF1.CEL.CEL.gz
| | Sample_series_id | GSE47777
| | Sample_data_row_count | 45101
| | |
|
GSM1159584 | GPL1261 |
|
Cebpg-/- MEFs at passage 3_biological replicate 2
|
Mouse embryonic fibroblasts
|
strain: C57BL/6
cell type: MEFs
genotype/variation: Cebpg-/-
|
CebpgKO_MEF2.CEL
|
| Sample_geo_accession | GSM1159584
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | Jun 10 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | MEFs were isolated from E13.5 embryos and passaged 3 times prior to experiment plating and collection.
| | Sample_growth_protocol_ch1 | MEFs cells were passaged in DMEM supplemented with 10% FBS and pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from MEFs using RNeasy Kits (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA. RNA was reverse transcribed with T7-oligo(dT) primer and biotin-labeled
| | Sample_hyb_protocol | Four replicates of each group were prepared, labeled, and hybridized to Affymetrix mouse 430 2.0 GeneChip
| | Sample_scan_protocol | GeneChips were scanned on Affymetrix GeneChip scanner 3000
| | Sample_data_processing | Following QC checks, microarray probe level data were normalized, background adjusted, and summarized with the RMA algorithm (Robust Multichip Analysis)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Peter,F,Johnson
| | Sample_contact_email | johnsope@mail.nih.gov
| | Sample_contact_phone | 301 846-1627
| | Sample_contact_laboratory | Mouse Cancer Genetics Program
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 1050 Boyles St
| | Sample_contact_city | FREDERICK
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21702-1201
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1159nnn/GSM1159584/suppl/GSM1159584_CebpgKO_MEF2.CEL.CEL.gz
| | Sample_series_id | GSE47777
| | Sample_data_row_count | 45101
| | |
|
GSM1159585 | GPL1261 |
|
Cebpg-/- MEFs at passage 3_biological replicate 3
|
Mouse embryonic fibroblasts
|
strain: C57BL/6
cell type: MEFs
genotype/variation: Cebpg-/-
|
CebpgKO_MEF3.CEL
|
| Sample_geo_accession | GSM1159585
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | Jun 10 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | MEFs were isolated from E13.5 embryos and passaged 3 times prior to experiment plating and collection.
| | Sample_growth_protocol_ch1 | MEFs cells were passaged in DMEM supplemented with 10% FBS and pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from MEFs using RNeasy Kits (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA. RNA was reverse transcribed with T7-oligo(dT) primer and biotin-labeled
| | Sample_hyb_protocol | Four replicates of each group were prepared, labeled, and hybridized to Affymetrix mouse 430 2.0 GeneChip
| | Sample_scan_protocol | GeneChips were scanned on Affymetrix GeneChip scanner 3000
| | Sample_data_processing | Following QC checks, microarray probe level data were normalized, background adjusted, and summarized with the RMA algorithm (Robust Multichip Analysis)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Peter,F,Johnson
| | Sample_contact_email | johnsope@mail.nih.gov
| | Sample_contact_phone | 301 846-1627
| | Sample_contact_laboratory | Mouse Cancer Genetics Program
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 1050 Boyles St
| | Sample_contact_city | FREDERICK
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21702-1201
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1159nnn/GSM1159585/suppl/GSM1159585_CebpgKO_MEF3.CEL.CEL.gz
| | Sample_series_id | GSE47777
| | Sample_data_row_count | 45101
| | |
|
GSM1159586 | GPL1261 |
|
Cebpg-/- MEFs at passage 3_biological replicate 4
|
Mouse embryonic fibroblasts
|
strain: C57BL/6
cell type: MEFs
genotype/variation: Cebpg-/-
|
CebpgKO_MEF4.CEL
|
| Sample_geo_accession | GSM1159586
| | Sample_status | Public on Jun 30 2013
| | Sample_submission_date | Jun 10 2013
| | Sample_last_update_date | Jun 30 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | MEFs were isolated from E13.5 embryos and passaged 3 times prior to experiment plating and collection.
| | Sample_growth_protocol_ch1 | MEFs cells were passaged in DMEM supplemented with 10% FBS and pen/strep.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from MEFs using RNeasy Kits (Qiagen) according to manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA. RNA was reverse transcribed with T7-oligo(dT) primer and biotin-labeled
| | Sample_hyb_protocol | Four replicates of each group were prepared, labeled, and hybridized to Affymetrix mouse 430 2.0 GeneChip
| | Sample_scan_protocol | GeneChips were scanned on Affymetrix GeneChip scanner 3000
| | Sample_data_processing | Following QC checks, microarray probe level data were normalized, background adjusted, and summarized with the RMA algorithm (Robust Multichip Analysis)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Peter,F,Johnson
| | Sample_contact_email | johnsope@mail.nih.gov
| | Sample_contact_phone | 301 846-1627
| | Sample_contact_laboratory | Mouse Cancer Genetics Program
| | Sample_contact_department | Center for Cancer Research
| | Sample_contact_institute | National Cancer Institute
| | Sample_contact_address | 1050 Boyles St
| | Sample_contact_city | FREDERICK
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 21702-1201
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1159nnn/GSM1159586/suppl/GSM1159586_CebpgKO_MEF4.CEL.CEL.gz
| | Sample_series_id | GSE47777
| | Sample_data_row_count | 45101
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