Search results for the GEO ID: GSE47855  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1160693 | GPL570 |
|
CD56- T cell replicate 1
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56- T-cell
|
|
| Sample_geo_accession | GSM1160693
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160693/suppl/GSM1160693_wk1081-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160693/suppl/GSM1160693_wk1081-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160694 | GPL570 |
|
NK cell replicate 1
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3-CD56+ NK cell
|
|
| Sample_geo_accession | GSM1160694
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160694/suppl/GSM1160694_wk1082-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160694/suppl/GSM1160694_wk1082-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160695 | GPL570 |
|
CD56+ T cell replicate 1
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160695
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160695/suppl/GSM1160695_wk1083-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160695/suppl/GSM1160695_wk1083-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160696 | GPL570 |
|
KIR-CD56+ T cell replicate 1
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR-CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160696
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160696/suppl/GSM1160696_wk1084-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160696/suppl/GSM1160696_wk1084-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160697 | GPL570 |
|
KIR+CD56+ T cell replicate 1
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR+CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160697
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160697/suppl/GSM1160697_wk1085-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160697/suppl/GSM1160697_wk1085-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160698 | GPL570 |
|
iNKT cell replicate 1
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+TCRValpha+ iNKT-cell
|
|
| Sample_geo_accession | GSM1160698
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160698/suppl/GSM1160698_wkc290-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160698/suppl/GSM1160698_wkc290-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160699 | GPL570 |
|
CD56- T cell replicate 2
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56- T-cell
|
|
| Sample_geo_accession | GSM1160699
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160699/suppl/GSM1160699_wkc023-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160699/suppl/GSM1160699_wkc023-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160700 | GPL570 |
|
NK cell replicate 2
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3-CD56+ NK cell
|
|
| Sample_geo_accession | GSM1160700
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160700/suppl/GSM1160700_wkc024-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160700/suppl/GSM1160700_wkc024-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160701 | GPL570 |
|
CD56+ T cell replicate 2
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160701
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160701/suppl/GSM1160701_wkc025-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160701/suppl/GSM1160701_wkc025-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160702 | GPL570 |
|
KIR-CD56+ T cell replicate 2
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR-CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160702
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160702/suppl/GSM1160702_wkc026-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160702/suppl/GSM1160702_wkc026-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160703 | GPL570 |
|
KIR+CD56+ T cell replicate 2
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR+CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160703
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160703/suppl/GSM1160703_wkc027-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160703/suppl/GSM1160703_wkc027-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160704 | GPL570 |
|
iNKT cell replicate 2
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+TCRValpha+ iNKT-cell
|
|
| Sample_geo_accession | GSM1160704
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160704/suppl/GSM1160704_wkc291-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160704/suppl/GSM1160704_wkc291-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160705 | GPL570 |
|
CD56- T cell replicate 3
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56- T-cell
|
|
| Sample_geo_accession | GSM1160705
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160705/suppl/GSM1160705_wkc266-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160705/suppl/GSM1160705_wkc266-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160706 | GPL570 |
|
NK cell replicate 3
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3-CD56+ NK cell
|
|
| Sample_geo_accession | GSM1160706
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160706/suppl/GSM1160706_wkc267-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160706/suppl/GSM1160706_wkc267-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160707 | GPL570 |
|
CD56+ T cell replicate 3
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160707
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160707/suppl/GSM1160707_wkc268-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160707/suppl/GSM1160707_wkc268-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160708 | GPL570 |
|
KIR-CD56+ T cell replicate 3
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR-CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160708
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160708/suppl/GSM1160708_wkc269-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160708/suppl/GSM1160708_wkc269-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160709 | GPL570 |
|
KIR+CD56+ T cell replicate 3
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR+CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160709
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160709/suppl/GSM1160709_wkc270-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160709/suppl/GSM1160709_wkc270-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160710 | GPL570 |
|
iNKT cell replicate 3
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+TCRValpha+ iNKT-cell
|
|
| Sample_geo_accession | GSM1160710
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160710/suppl/GSM1160710_wkc292-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160710/suppl/GSM1160710_wkc292-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160711 | GPL570 |
|
CD56- T cell replicate 4
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56- T-cell
|
|
| Sample_geo_accession | GSM1160711
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160711/suppl/GSM1160711_wkc271-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160711/suppl/GSM1160711_wkc271-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160712 | GPL570 |
|
NK cell replicate 4
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3-CD56+ NK cell
|
|
| Sample_geo_accession | GSM1160712
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160712/suppl/GSM1160712_wkc272-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160712/suppl/GSM1160712_wkc272-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160713 | GPL570 |
|
CD56+ T cell replicate 4
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160713
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160713/suppl/GSM1160713_wkc273-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160713/suppl/GSM1160713_wkc273-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160714 | GPL570 |
|
KIR-CD56+ T cell replicate 4
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR-CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160714
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160714/suppl/GSM1160714_wkc274-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160714/suppl/GSM1160714_wkc274-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160715 | GPL570 |
|
KIR+CD56+ T cell replicate 4
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR+CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160715
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160715/suppl/GSM1160715_wkc275-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160715/suppl/GSM1160715_wkc275-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160716 | GPL570 |
|
iNKT cell replicate 4
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+TCRValpha+ iNKT-cell
|
|
| Sample_geo_accession | GSM1160716
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160716/suppl/GSM1160716_wkc293-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160716/suppl/GSM1160716_wkc293-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160717 | GPL570 |
|
CD56- T cell replicate 5
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56- T-cell
|
|
| Sample_geo_accession | GSM1160717
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160717/suppl/GSM1160717_wkc281-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160717/suppl/GSM1160717_wkc281-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160719 | GPL570 |
|
CD56+ T cell replicate 5
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160719
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160719/suppl/GSM1160719_wkc283-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160719/suppl/GSM1160719_wkc283-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160720 | GPL570 |
|
KIR-CD56+ T cell replicate 5
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR-CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160720
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160720/suppl/GSM1160720_wkc284-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160720/suppl/GSM1160720_wkc284-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160721 | GPL570 |
|
KIR+CD56+ T cell replicate 5
|
Human peripheral blood monor nuclear cells
|
immunophenotype: KIR+CD3+CD56+ T-cell
|
|
| Sample_geo_accession | GSM1160721
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160721/suppl/GSM1160721_wkc285-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160721/suppl/GSM1160721_wkc285-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
GSM1160722 | GPL570 |
|
iNKT cell replicate 5
|
Human peripheral blood monor nuclear cells
|
immunophenotype: CD3+TCRValpha+ iNKT-cell
|
|
| Sample_geo_accession | GSM1160722
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 11 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Lymphocyte subsets were sorted with FACSAriaII (BD Biosciences, San Jose, CA).
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Qiagen Rneasy Mini/Micro kit accroding to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the two-cycle eukaryote target Affymetrix protocol starting from 10-100 nanograms of total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 12.5 micrograms of biotinylated cRNA were hybridized for 16 hr at 45C on an Affymetrix GeneChip Mouse 430 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.
| | Sample_data_processing | Expression values were summarized using the MAS5 algorithm as implemented in the GCOS v1.4 software (Affymetrix). Signals were variance adjusted by log-transformation prior to statistical analysis. Analysis of variance (ANOVA) was performed using Partek Genomics Suite v6.4. The false discovery rate was controlled at a level of 0.05 unless otherwise stated.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Geoffrey,,Neale
| | Sample_contact_email | geoffrey.neale@stjude.org
| | Sample_contact_institute | St Jude Childrens Research Hospital
| | Sample_contact_address | 332 N Lauderdale St
| | Sample_contact_city | Memphis
| | Sample_contact_state | TN
| | Sample_contact_zip/postal_code | 38105
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160722/suppl/GSM1160722_wkc294-u133v2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1160nnn/GSM1160722/suppl/GSM1160722_wkc294-u133v2.CHP.gz
| | Sample_series_id | GSE47855
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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