Search results for the GEO ID: GSE48029  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1165976 | GPL570 |
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Jurkat cell stably expressing HBZ without stimulation
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Jurkat cells
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cell type: immortalized line of T lymphocyte cells
genotype/varitaion: stably expressing HBZ
stimulated with: none (unstimulated)
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070628 H (-)
Gene expression data from Jurkat cell stably expressing HBZ without stimulation
|
| Sample_geo_accession | GSM1165976
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 17 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Jurkat-control and Jurkat-HBZ were stimulated with phorbol myristate acetate (PMA) (50 ng/ml) and ionomycin (1ug/ml) for 9 hrs
| | Sample_growth_protocol_ch1 | RPMI with 10% FBS and antibioticsRPMI 1640 medium supplemented with 10% fetal bovine serum (FBS) and antibiotics at 37°C under a 5% CO2 atmosphere. G418 (1mg/ml) was added for selection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was normalized using percentile shift algorithm (value=50, Genespring GX 11.0.2), and baseline-corrected (Baseline to median of all samples). Probesets were fileter by expression Lower cut off=15-20 and by Flags (default).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Azusa,,Tanaka
| | Sample_contact_email | azurenaka19@gmail.com
| | Sample_contact_phone | 0757514035
| | Sample_contact_institute | Kyoto university
| | Sample_contact_address | sakyo-ku
| | Sample_contact_city | kyoto
| | Sample_contact_zip/postal_code | 6068507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1165nnn/GSM1165976/suppl/GSM1165976_070628_H_-_.CEL.gz
| | Sample_series_id | GSE48029
| | Sample_data_row_count | 30986
| | |
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GSM1165977 | GPL570 |
|
Jurkat cell stably expressing HBZ with stimulation
|
Jurkat cells
|
cell type: immortalized line of T lymphocyte cells
genotype/varitaion: stably expressing HBZ
stimulated with: PMA and ionomycin for 9hrs
|
070629 H (+)
Gene expression data from Jurkat cell stably expressing HBZ with stimulation
|
| Sample_geo_accession | GSM1165977
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 17 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Jurkat-control and Jurkat-HBZ were stimulated with phorbol myristate acetate (PMA) (50 ng/ml) and ionomycin (1ug/ml) for 9 hrs
| | Sample_growth_protocol_ch1 | RPMI with 10% FBS and antibioticsRPMI 1640 medium supplemented with 10% fetal bovine serum (FBS) and antibiotics at 37°C under a 5% CO2 atmosphere. G418 (1mg/ml) was added for selection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was normalized using percentile shift algorithm (value=50, Genespring GX 11.0.2), and baseline-corrected (Baseline to median of all samples). Probesets were fileter by expression Lower cut off=15-20 and by Flags (default).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Azusa,,Tanaka
| | Sample_contact_email | azurenaka19@gmail.com
| | Sample_contact_phone | 0757514035
| | Sample_contact_institute | Kyoto university
| | Sample_contact_address | sakyo-ku
| | Sample_contact_city | kyoto
| | Sample_contact_zip/postal_code | 6068507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1165nnn/GSM1165977/suppl/GSM1165977_070629_H_+_.CEL.gz
| | Sample_series_id | GSE48029
| | Sample_data_row_count | 30986
| | |
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GSM1165978 | GPL570 |
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Jurkat cells without stimulation
|
Jurkat cells
|
cell type: immortalized line of T lymphocyte cells
stimulated with: none (unstimulated)
|
070628 C (-)
Gene expression data from Jurkat cells without stimulation
|
| Sample_geo_accession | GSM1165978
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 17 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Jurkat-control and Jurkat-HBZ were stimulated with phorbol myristate acetate (PMA) (50 ng/ml) and ionomycin (1ug/ml) for 9 hrs
| | Sample_growth_protocol_ch1 | RPMI with 10% FBS and antibioticsRPMI 1640 medium supplemented with 10% fetal bovine serum (FBS) and antibiotics at 37°C under a 5% CO2 atmosphere. G418 (1mg/ml) was added for selection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was normalized using percentile shift algorithm (value=50, Genespring GX 11.0.2), and baseline-corrected (Baseline to median of all samples). Probesets were fileter by expression Lower cut off=15-20 and by Flags (default).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Azusa,,Tanaka
| | Sample_contact_email | azurenaka19@gmail.com
| | Sample_contact_phone | 0757514035
| | Sample_contact_institute | Kyoto university
| | Sample_contact_address | sakyo-ku
| | Sample_contact_city | kyoto
| | Sample_contact_zip/postal_code | 6068507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1165nnn/GSM1165978/suppl/GSM1165978_070628_cont_-_.CEL.gz
| | Sample_series_id | GSE48029
| | Sample_data_row_count | 30986
| | |
|
GSM1165979 | GPL570 |
|
Jurkat cells with stimulation
|
Jurkat cells
|
cell type: immortalized line of T lymphocyte cells
stimulated with: PMA and ionomycin for 9hrs
|
070628 C (+)
Gene expression data from Jurkat cells with stimulation
|
| Sample_geo_accession | GSM1165979
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 17 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Jurkat-control and Jurkat-HBZ were stimulated with phorbol myristate acetate (PMA) (50 ng/ml) and ionomycin (1ug/ml) for 9 hrs
| | Sample_growth_protocol_ch1 | RPMI with 10% FBS and antibioticsRPMI 1640 medium supplemented with 10% fetal bovine serum (FBS) and antibiotics at 37°C under a 5% CO2 atmosphere. G418 (1mg/ml) was added for selection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data was normalized using percentile shift algorithm (value=50, Genespring GX 11.0.2), and baseline-corrected (Baseline to median of all samples). Probesets were fileter by expression Lower cut off=15-20 and by Flags (default).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Azusa,,Tanaka
| | Sample_contact_email | azurenaka19@gmail.com
| | Sample_contact_phone | 0757514035
| | Sample_contact_institute | Kyoto university
| | Sample_contact_address | sakyo-ku
| | Sample_contact_city | kyoto
| | Sample_contact_zip/postal_code | 6068507
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1165nnn/GSM1165979/suppl/GSM1165979_070628_cont_+_.CEL.gz
| | Sample_series_id | GSE48029
| | Sample_data_row_count | 30986
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