Search results for the GEO ID: GSE48046  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1166279 | GPL570 |
|
ALLSIL DMSO control 24h rep1
|
ALLSIL_1
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
ALL-SIL human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166279
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166279/suppl/GSM1166279_CONTROL_ALLSIL_DMSO24-1.CEL.gz
| | Sample_relation | Reanalysis of: GSM132964
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166280 | GPL570 |
|
ALLSIL DMSO control 24h rep2
|
ALLSIL_2
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
ALL-SIL human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166280
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166280/suppl/GSM1166280_CONTROL_ALLSIL_DMSO24-2.CEL.gz
| | Sample_relation | Reanalysis of: GSM132965
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166281 | GPL570 |
|
CCRF-CEM DMSO control 24h rep1
|
CCRF-CEM_1
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
CCRF-CEM human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166281
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166281/suppl/GSM1166281_CONTROL_CCRF-CEM_DMSO_24hs_1.CEL.gz
| | Sample_relation | Reanalysis of: GSM132966
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166282 | GPL570 |
|
CCRF-CEM DMSO control 24h rep2
|
CCRF-CEM_2
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
CCRF-CEM human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166282
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166282/suppl/GSM1166282_CONTROL_CCRF-CEM_DMSO_24hs_2.CEL.gz
| | Sample_relation | Reanalysis of: GSM132988
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166283 | GPL570 |
|
CTV1 DMSO control 24h rep1
|
CTV1_1
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
CTV1 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166283
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166283/suppl/GSM1166283_CONTROL_CTV1-DMSO24-1.CEL.gz
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166284 | GPL570 |
|
CTV1 DMSO control 24h rep2
|
CTV1_2
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
CTV1 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166284
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166284/suppl/GSM1166284_CONTROL_CTV1-DMSO24-2.CEL.gz
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166285 | GPL570 |
|
CUTLL1 DMSO control 24h rep1
|
CUTLL1_1
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
CUTLL1 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166285
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166285/suppl/GSM1166285_CONTROL_CUTLL1DMSO24hs1.CEL.gz
| | Sample_relation | Reanalysis of: GSM132991
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166286 | GPL570 |
|
CUTLL1 DMSO control 24h rep2
|
CUTLL1_2
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
CUTLL1 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166286
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166286/suppl/GSM1166286_CONTROL_CUTLL1DMSO24hs2.CEL.gz
| | Sample_relation | Reanalysis of: GSM132994
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166287 | GPL570 |
|
DND41 DMSO control 24h rep1
|
DND41_1
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
DND41 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166287
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166287/suppl/GSM1166287_CONTROL_DND41_CTRL_3.CEL.gz
| | Sample_relation | Reanalysis of: GSM133004
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166288 | GPL570 |
|
DND41 DMSO control 24h rep2
|
DND41_2
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
DND41 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166288
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166288/suppl/GSM1166288_CONTROL_DND41_CTRL2.CEL.gz
| | Sample_relation | Reanalysis of: GSM133006
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166289 | GPL570 |
|
HPBALL DMSO control 24h rep1
|
HPBALL_1
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
HPBALL human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166289
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166289/suppl/GSM1166289_CONTROL_HPBALL_DMSO24-1.CEL.gz
| | Sample_relation | Reanalysis of: GSM133023
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166290 | GPL570 |
|
HPBALL DMSO control 24h rep2
|
HPBALL_2
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
HPBALL human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166290
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166290/suppl/GSM1166290_CONTROL_HPBALL_DMSO24-2.CEL.gz
| | Sample_relation | Reanalysis of: GSM133007
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166291 | GPL570 |
|
KOPTK1 DMSO control 24h rep1
|
KOPTK1_1
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
KOPTK1 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166291
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166291/suppl/GSM1166291_CONTROL_KOPTK1_DMSO24-2.CEL.gz
| | Sample_relation | Reanalysis of: GSM133010
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166292 | GPL570 |
|
KOPTK1 DMSO control 24h rep2
|
KOPTK1_2
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
KOPTK1 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166292
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166292/suppl/GSM1166292_CONTROL_KOPTK1_DMSO24-3.CEL.gz
| | Sample_relation | Reanalysis of: GSM133011
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166293 | GPL570 |
|
RPMI8402 DMSO control 24h rep1
|
RPMI8402_1
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
RPMI8402 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166293
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166293/suppl/GSM1166293_CONTROL_RPMI8402_DMSO24hs1.CEL.gz
| | Sample_relation | Reanalysis of: GSM133020
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166294 | GPL570 |
|
RPMI8402 DMSO control 24h rep2
|
RPMI8402_2
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
RPMI8402 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166294
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166294/suppl/GSM1166294_CONTROL_RPMI8402_DMSO24hs2.CEL.gz
| | Sample_relation | Reanalysis of: GSM133021
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166295 | GPL570 |
|
TALL1 DMSO control 24h rep1
|
TALL1_1
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
TALL1 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166295
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166295/suppl/GSM1166295_CONTROL_TALL1_DMSO24-1.CEL.gz
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166296 | GPL570 |
|
TALL1 DMSO control 24h rep2
|
TALL1_2
|
tissue: T-cell lymphoblastic cell
type: Late mature
|
TALL1 human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166296
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166296/suppl/GSM1166296_CONTROL_TALL1_DMSO24-2.CEL.gz
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166297 | GPL570 |
|
LOUCY DMSO control 24h rep1
|
LOUCY_1
|
tissue: T-cell lymphoblastic cell
type: Early immature
|
LOUCY human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166297
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166297/suppl/GSM1166297_LOUCY_1.CEL.gz
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
GSM1166298 | GPL570 |
|
LOUCY DMSO control 24h rep2
|
LOUCY_2
|
tissue: T-cell lymphoblastic cell
type: Early immature
|
LOUCY human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
| Sample_geo_accession | GSM1166298
| | Sample_status | Public on Jun 18 2013
| | Sample_submission_date | Jun 18 2013
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cell lines treated for 24 h with vehicle (DMSO)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | After 24h, RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Hybridization to the HumanHT-12 v4 Expression BeadChip (Illumina) was performed according to manufacturer's protocol
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Gene expression data were transfomed to log2 scale and normalized using quantile normalization without background subtraction
| | Sample_platform_id | GPL570
| | Sample_contact_name | Alberto,,Ambesi-Impiombato
| | Sample_contact_department | ICG
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St. Nicholas Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1166nnn/GSM1166298/suppl/GSM1166298_LOUCY_2.CEL.gz
| | Sample_series_id | GSE48046
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
