Search results for the GEO ID: GSE48382  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1176808 | GPL1261 |
|
Differentiated keratinocytes treated with 5-AZA #1
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: differentiated keratinocytes
treatment: 5-AZA
|
Gene expression from differentiated keratinocytes treated with 5-AZA #1
|
| Sample_geo_accession | GSM1176808
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176808/suppl/GSM1176808_Ker_5AZa_Hi_Ca-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176808/suppl/GSM1176808_Ker_5AZa_Hi_Ca-1.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
| | |
|
GSM1176809 | GPL1261 |
|
Differentiated keratinocytes treated with 5-AZA #2
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: differentiated keratinocytes
treatment: 5-AZA
|
Gene expression from differentiated keratinocytes treated with 5-AZA #2
|
| Sample_geo_accession | GSM1176809
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176809/suppl/GSM1176809_Ker_5AZa_Hi_Ca-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176809/suppl/GSM1176809_Ker_5AZa_Hi_Ca-2.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
| | |
|
GSM1176810 | GPL1261 |
|
A-C/EBP expressing differentiated keratinocytes #1
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: A-C/EBP expressing differentiated keratinocytes
|
Gene expression from A-C/EBP expressing differentiated keratinocytes #2
|
| Sample_geo_accession | GSM1176810
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176810/suppl/GSM1176810_Ker_K5ACEBP_Hi_Ca-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176810/suppl/GSM1176810_Ker_K5ACEBP_Hi_Ca-1.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
| | |
|
GSM1176811 | GPL1261 |
|
A-C/EBP expressing differentiated keratinocytes #2
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: A-C/EBP expressing differentiated keratinocytes
|
Gene expression from A-C/EBP expressing differentiated keratinocytes #2
|
| Sample_geo_accession | GSM1176811
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176811/suppl/GSM1176811_Ker_K5ACEBP_Hi_Ca-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176811/suppl/GSM1176811_Ker_K5ACEBP_Hi_Ca-2.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
| | |
|
GSM1176812 | GPL1261 |
|
Differentiated keratinocytes #1
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: differentiated keratinocytes
|
Gene expression from differentiated keratinocytes #1
|
| Sample_geo_accession | GSM1176812
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176812/suppl/GSM1176812_Ker_WT_Hi_Ca-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176812/suppl/GSM1176812_Ker_WT_Hi_Ca-1.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
| | |
|
GSM1176813 | GPL1261 |
|
Differentiated keratinocytes #2
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: differentiated keratinocytes
|
Gene expression from differentiated keratinocytes #2
|
| Sample_geo_accession | GSM1176813
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176813/suppl/GSM1176813_Ker_WT_Hi_Ca-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176813/suppl/GSM1176813_Ker_WT_Hi_Ca-2.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
| | |
|
GSM1176814 | GPL1261 |
|
Differentiated keratinocytes #3
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: differentiated keratinocytes
|
Gene expression from differentiated keratinocytes #3
|
| Sample_geo_accession | GSM1176814
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176814/suppl/GSM1176814_Ker_WT_Hi_Ca-3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176814/suppl/GSM1176814_Ker_WT_Hi_Ca-3.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
| | |
|
GSM1176815 | GPL1261 |
|
Differentiated keratinocytes #4
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: differentiated keratinocytes
|
Gene expression from differentiated keratinocytes #4
|
| Sample_geo_accession | GSM1176815
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176815/suppl/GSM1176815_Ker_WT_Hi_Ca-4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176815/suppl/GSM1176815_Ker_WT_Hi_Ca-4.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
| | |
|
GSM1176816 | GPL1261 |
|
Undifferentiated keratinocytes#1
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: Undifferentiated keratinocytes
|
Gene expression from Undifferentiated keratinocytes#1
|
| Sample_geo_accession | GSM1176816
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176816/suppl/GSM1176816_Ker_WT_Lo_Ca-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176816/suppl/GSM1176816_Ker_WT_Lo_Ca-1.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
| | |
|
GSM1176817 | GPL1261 |
|
Undifferentiated keratinocytes#2
|
FVB P1 mouse
|
cell type: Cultured primary mouse keratinocytes
strain: FVB
cell type: Undifferentiated keratinocytes
|
Gene expression from Undifferentiated keratinocytes#2
|
| Sample_geo_accession | GSM1176817
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jun 27 2013
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | After 1 day in culture cells where treated with 5-AZA or A/CEBP expression was induced.
| | Sample_growth_protocol_ch1 | Primary mouse keratinocytes either undifferentiated or Ca differentiated for 2 days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was performed according to the Qiagen instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with Expression console using Affymetrix default RMA analysis settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Julian,,Rozenberg
| | Sample_contact_department | Pathology and Lab Medicine
| | Sample_contact_institute | University Of North Carolina
| | Sample_contact_address | Brinkhous-Bullitt Bldg., CB#7525
| | Sample_contact_city | Chapel Hill
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27599
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176817/suppl/GSM1176817_Ker_WT_Lo_Ca-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1176nnn/GSM1176817/suppl/GSM1176817_Ker_WT_Lo_Ca-2.rma.chp.gz
| | Sample_series_id | GSE48382
| | Sample_series_id | GSE48383
| | Sample_data_row_count | 45101
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