Search results for the GEO ID: GSE48595 |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1181877 | GPL1261 |
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Lung at at control, biological rep1
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Lung tissue specimens from normal control mouse
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strain: C57BL/6
tissue: lung
age: Five-weeks-old
gender: male
agent: control
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Gene expression data from the lung of control mice
Control mouse
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Sample_geo_accession | GSM1181877
| Sample_status | Public on Jul 08 2013
| Sample_submission_date | Jul 08 2013
| Sample_last_update_date | Jul 09 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | The mice were infected by an intratracheal administration of C. gattii TIMM 4097 or 4903. 15 days after infection, the lung of mice were removed and prepared for the analysis
| Sample_growth_protocol_ch1 | All strains were pre-incubated with Yeast Peptone Dextrose (YPD) Broth at 30°C for 48 hours
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA targets preparation were performed according to the manufacturer's protocol using GeneChip(R) 3' IVT Express Kit (Affymetrix).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 12.5 μg of them was hybridized to GeneChip(R) Mouse Genome 430 2.0 Array (Affymetrix). The array was incubated for 16 hr at 45°C, then automatically washed and stained with GeneChip(R) Hybridization, Wash and Stain Kit (Affymetrix)
| Sample_scan_protocol | The Probe Array was scanned using a GeneChip(R) Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix GeneChip® Command Console AGCC Software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yoichiro,,Okubo
| Sample_contact_email | yoichiro0207@med.toho-u.ac.jp
| Sample_contact_department | Surgical Pathology
| Sample_contact_institute | Toho University
| Sample_contact_address | 6-11-1 Omori-Nishi
| Sample_contact_city | Ota-Ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 143-8541
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1181nnn/GSM1181877/suppl/GSM1181877_01_lung_control_No_560_2.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1181nnn/GSM1181877/suppl/GSM1181877_CEL01_lung_control_No_560_2.CEL.gz
| Sample_series_id | GSE48595
| Sample_data_row_count | 45101
| |
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GSM1181878 | GPL1261 |
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Lung at at TIMM 4097, biological rep1
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Lung tissue specimens from C. gattii TIMM4097 infected mouse
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strain: C57BL/6
tissue: lung
age: Five-weeks-old
gender: male
agent: C. gattii TIMM 4097
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Gene expression data from the lung of mice infected with C. gattii TIMM4097
TIMM 4097 infected mouse
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Sample_geo_accession | GSM1181878
| Sample_status | Public on Jul 08 2013
| Sample_submission_date | Jul 08 2013
| Sample_last_update_date | Jul 09 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | The mice were infected by an intratracheal administration of C. gattii TIMM 4097 or 4903. 15 days after infection, the lung of mice were removed and prepared for the analysis
| Sample_growth_protocol_ch1 | All strains were pre-incubated with Yeast Peptone Dextrose (YPD) Broth at 30°C for 48 hours
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA targets preparation were performed according to the manufacturer's protocol using GeneChip(R) 3' IVT Express Kit (Affymetrix).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 12.5 μg of them was hybridized to GeneChip(R) Mouse Genome 430 2.0 Array (Affymetrix). The array was incubated for 16 hr at 45°C, then automatically washed and stained with GeneChip(R) Hybridization, Wash and Stain Kit (Affymetrix)
| Sample_scan_protocol | The Probe Array was scanned using a GeneChip(R) Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix GeneChip® Command Console AGCC Software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yoichiro,,Okubo
| Sample_contact_email | yoichiro0207@med.toho-u.ac.jp
| Sample_contact_department | Surgical Pathology
| Sample_contact_institute | Toho University
| Sample_contact_address | 6-11-1 Omori-Nishi
| Sample_contact_city | Ota-Ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 143-8541
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1181nnn/GSM1181878/suppl/GSM1181878_02_lung_TIMM_4097_No_560_2.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1181nnn/GSM1181878/suppl/GSM1181878_CEL02_lung_TIMM_4097_No_560_2.CEL.gz
| Sample_series_id | GSE48595
| Sample_data_row_count | 45101
| |
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GSM1181879 | GPL1261 |
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Lung at at TIMM 4903, biological rep1
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Lung tissue specimens from C. gattii TIMM4903 infected mouse
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strain: C57BL/6
tissue: lung
age: Five-weeks-old
gender: male
agent: C. gattii TIMM 4903
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Gene expression data from the lung of mice infected with C. gattii TIMM4903
TIMM 4903 infected mouse
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Sample_geo_accession | GSM1181879
| Sample_status | Public on Jul 08 2013
| Sample_submission_date | Jul 08 2013
| Sample_last_update_date | Jul 09 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | The mice were infected by an intratracheal administration of C. gattii TIMM 4097 or 4903. 15 days after infection, the lung of mice were removed and prepared for the analysis
| Sample_growth_protocol_ch1 | All strains were pre-incubated with Yeast Peptone Dextrose (YPD) Broth at 30°C for 48 hours
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA targets preparation were performed according to the manufacturer's protocol using GeneChip(R) 3' IVT Express Kit (Affymetrix).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| Sample_hyb_protocol | Following fragmentation, 12.5 μg of them was hybridized to GeneChip(R) Mouse Genome 430 2.0 Array (Affymetrix). The array was incubated for 16 hr at 45°C, then automatically washed and stained with GeneChip(R) Hybridization, Wash and Stain Kit (Affymetrix)
| Sample_scan_protocol | The Probe Array was scanned using a GeneChip(R) Scanner 3000 7G
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix GeneChip® Command Console AGCC Software.
| Sample_platform_id | GPL1261
| Sample_contact_name | Yoichiro,,Okubo
| Sample_contact_email | yoichiro0207@med.toho-u.ac.jp
| Sample_contact_department | Surgical Pathology
| Sample_contact_institute | Toho University
| Sample_contact_address | 6-11-1 Omori-Nishi
| Sample_contact_city | Ota-Ku
| Sample_contact_state | Tokyo
| Sample_contact_zip/postal_code | 143-8541
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1181nnn/GSM1181879/suppl/GSM1181879_03_lung_TIMM_4903_No_560_2.CHP.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1181nnn/GSM1181879/suppl/GSM1181879_CEL03_lung_TIMM_4903_No_560_2.CEL.gz
| Sample_series_id | GSE48595
| Sample_data_row_count | 45101
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