Search results for the GEO ID: GSE4865  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM109337 | GPL1355 |
|
control_1
|
rat pituitary organ culture
|
control
|
control_rat_pituitary_organ_culture_1
|
| Sample_geo_accession | GSM109337
| | Sample_status | Public on Aug 31 2006
| | Sample_submission_date | May 18 2006
| | Sample_last_update_date | May 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using standard Trizol protocol, followed by Qiagen RNeasy column clean-up
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Richard,B,Roth
| | Sample_contact_email | rroth@neurocrine.com
| | Sample_contact_department | Molecular Medicine
| | Sample_contact_institute | Neurocrine Biosciences, Inc.
| | Sample_contact_address | 12790 El Camino Real
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92130
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109337/suppl/GSM109337.CEL.gz
| | Sample_series_id | GSE4865
| | Sample_data_row_count | 31042
| | |
|
GSM109338 | GPL1355 |
|
control_2
|
rat pituitary organ culture
|
control
|
control_rat_pituitary_organ_culture_2
|
| Sample_geo_accession | GSM109338
| | Sample_status | Public on Aug 31 2006
| | Sample_submission_date | May 18 2006
| | Sample_last_update_date | May 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using standard Trizol protocol, followed by Qiagen RNeasy column clean-up
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Richard,B,Roth
| | Sample_contact_email | rroth@neurocrine.com
| | Sample_contact_department | Molecular Medicine
| | Sample_contact_institute | Neurocrine Biosciences, Inc.
| | Sample_contact_address | 12790 El Camino Real
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92130
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109338/suppl/GSM109338.CEL.gz
| | Sample_series_id | GSE4865
| | Sample_data_row_count | 31042
| | |
|
GSM109339 | GPL1355 |
|
control_3
|
rat pituitary organ culture
|
control
|
control_rat_pituitary_organ_culture_3
|
| Sample_geo_accession | GSM109339
| | Sample_status | Public on Aug 31 2006
| | Sample_submission_date | May 18 2006
| | Sample_last_update_date | May 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using standard Trizol protocol, followed by Qiagen RNeasy column clean-up
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Richard,B,Roth
| | Sample_contact_email | rroth@neurocrine.com
| | Sample_contact_department | Molecular Medicine
| | Sample_contact_institute | Neurocrine Biosciences, Inc.
| | Sample_contact_address | 12790 El Camino Real
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92130
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109339/suppl/GSM109339.CEL.gz
| | Sample_series_id | GSE4865
| | Sample_data_row_count | 31042
| | |
|
GSM109340 | GPL1355 |
|
GnRH_10nM_1
|
rat pituitary organ culture
|
treated
|
GnRH_10nM_rat_pituitary_organ_culture_1
|
| Sample_geo_accession | GSM109340
| | Sample_status | Public on Aug 31 2006
| | Sample_submission_date | May 18 2006
| | Sample_last_update_date | May 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using standard Trizol protocol, followed by Qiagen RNeasy column clean-up
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Richard,B,Roth
| | Sample_contact_email | rroth@neurocrine.com
| | Sample_contact_department | Molecular Medicine
| | Sample_contact_institute | Neurocrine Biosciences, Inc.
| | Sample_contact_address | 12790 El Camino Real
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92130
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109340/suppl/GSM109340.CEL.gz
| | Sample_series_id | GSE4865
| | Sample_data_row_count | 31042
| | |
|
GSM109341 | GPL1355 |
|
GnRH_10nM_2
|
rat pituitary organ culture
|
treated
|
GnRH_10nM_rat_pituitary_organ_culture_1
|
| Sample_geo_accession | GSM109341
| | Sample_status | Public on Aug 31 2006
| | Sample_submission_date | May 18 2006
| | Sample_last_update_date | May 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using standard Trizol protocol, followed by Qiagen RNeasy column clean-up
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Richard,B,Roth
| | Sample_contact_email | rroth@neurocrine.com
| | Sample_contact_department | Molecular Medicine
| | Sample_contact_institute | Neurocrine Biosciences, Inc.
| | Sample_contact_address | 12790 El Camino Real
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92130
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109341/suppl/GSM109341.CEL.gz
| | Sample_series_id | GSE4865
| | Sample_data_row_count | 31042
| | |
|
GSM109342 | GPL1355 |
|
GnRH_10nM_3
|
rat pituitary organ culture
|
treated
|
GnRH_10nM_rat_pituitary_organ_culture_1
|
| Sample_geo_accession | GSM109342
| | Sample_status | Public on Aug 31 2006
| | Sample_submission_date | May 18 2006
| | Sample_last_update_date | May 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extracted using standard Trizol protocol, followed by Qiagen RNeasy column clean-up
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | RMA
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Richard,B,Roth
| | Sample_contact_email | rroth@neurocrine.com
| | Sample_contact_department | Molecular Medicine
| | Sample_contact_institute | Neurocrine Biosciences, Inc.
| | Sample_contact_address | 12790 El Camino Real
| | Sample_contact_city | San Diego
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 92130
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109342/suppl/GSM109342.CEL.gz
| | Sample_series_id | GSE4865
| | Sample_data_row_count | 31042
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
