Search results for the GEO ID: GSE49120  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1194004 | GPL1261 |
|
pro-B_wt_rep1
|
control pro-B
|
age: 2-3 weeks old
tissue: bone marrow
cell type: Fraction B cells B220+CD43+HSA+BP-1-
genotype/variation: control
|
Gene expression data from BM Fraction B cells B220+CD43+HSA+BP-1-
control pro-B biological replicate 1
|
| Sample_geo_accession | GSM1194004
| | Sample_status | Public on Aug 05 2013
| | Sample_submission_date | Jul 23 2013
| | Sample_last_update_date | Aug 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) extraction of total RNA was performed and RNA was isolated using Qiagen RNeasy column and amplified using MessageAmp™II aRNA Amplification Kits (Ambion),
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with Biotin using BioArray HighYield RNA Transcript Labeling Kits (T7, Enzo Life Sciences)
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Intensities were determined with Microarray Suite version 5.0 (Affymetrix), normalized using GCRMA (BRB-ArrayTools v4.2.1) and differentially-expressed probe sets were determined by class comparison using unfiltered expression values with fold-change cut-off of 1.2. A P-value cut-off of 0.001 was used to keep the FDR < 20%.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bin,E,Li
| | Sample_contact_laboratory | Ernst
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth College
| | Sample_contact_address | Remsen 725
| | Sample_contact_city | Hanover
| | Sample_contact_state | New Hampshire
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1194nnn/GSM1194004/suppl/GSM1194004_01_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE49120
| | Sample_data_row_count | 45101
| | |
|
GSM1194005 | GPL1261 |
|
pro-B_wt_rep2
|
control pro-B
|
age: 2-3 weeks old
tissue: bone marrow
cell type: Fraction B cells B220+CD43+HSA+BP-1-
genotype/variation: control
|
Gene expression data from BM Fraction B cells B220+CD43+HSA+BP-1-
control pro-B biological replicate 2
|
| Sample_geo_accession | GSM1194005
| | Sample_status | Public on Aug 05 2013
| | Sample_submission_date | Jul 23 2013
| | Sample_last_update_date | Aug 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) extraction of total RNA was performed and RNA was isolated using Qiagen RNeasy column and amplified using MessageAmp™II aRNA Amplification Kits (Ambion),
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with Biotin using BioArray HighYield RNA Transcript Labeling Kits (T7, Enzo Life Sciences)
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Intensities were determined with Microarray Suite version 5.0 (Affymetrix), normalized using GCRMA (BRB-ArrayTools v4.2.1) and differentially-expressed probe sets were determined by class comparison using unfiltered expression values with fold-change cut-off of 1.2. A P-value cut-off of 0.001 was used to keep the FDR < 20%.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bin,E,Li
| | Sample_contact_laboratory | Ernst
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth College
| | Sample_contact_address | Remsen 725
| | Sample_contact_city | Hanover
| | Sample_contact_state | New Hampshire
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1194nnn/GSM1194005/suppl/GSM1194005_02_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE49120
| | Sample_data_row_count | 45101
| | |
|
GSM1194006 | GPL1261 |
|
pro-B_wt_rep3
|
control pro-B
|
age: 2-3 weeks old
tissue: bone marrow
cell type: Fraction B cells B220+CD43+HSA+BP-1-
genotype/variation: control
|
Gene expression data from BM Fraction B cells B220+CD43+HSA+BP-1-
control pro-B biological replicate 3
|
| Sample_geo_accession | GSM1194006
| | Sample_status | Public on Aug 05 2013
| | Sample_submission_date | Jul 23 2013
| | Sample_last_update_date | Aug 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) extraction of total RNA was performed and RNA was isolated using Qiagen RNeasy column and amplified using MessageAmp™II aRNA Amplification Kits (Ambion),
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with Biotin using BioArray HighYield RNA Transcript Labeling Kits (T7, Enzo Life Sciences)
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Intensities were determined with Microarray Suite version 5.0 (Affymetrix), normalized using GCRMA (BRB-ArrayTools v4.2.1) and differentially-expressed probe sets were determined by class comparison using unfiltered expression values with fold-change cut-off of 1.2. A P-value cut-off of 0.001 was used to keep the FDR < 20%.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bin,E,Li
| | Sample_contact_laboratory | Ernst
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth College
| | Sample_contact_address | Remsen 725
| | Sample_contact_city | Hanover
| | Sample_contact_state | New Hampshire
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1194nnn/GSM1194006/suppl/GSM1194006_03_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE49120
| | Sample_data_row_count | 45101
| | |
|
GSM1194007 | GPL1261 |
|
pro-B_wt_rep4
|
control pro-B
|
age: 2-3 weeks old
tissue: bone marrow
cell type: Fraction B cells B220+CD43+HSA+BP-1-
genotype/variation: control
|
Gene expression data from BM Fraction B cells B220+CD43+HSA+BP-1-
control pro-B biological replicate 4
|
| Sample_geo_accession | GSM1194007
| | Sample_status | Public on Aug 05 2013
| | Sample_submission_date | Jul 23 2013
| | Sample_last_update_date | Aug 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) extraction of total RNA was performed and RNA was isolated using Qiagen RNeasy column and amplified using MessageAmp™II aRNA Amplification Kits (Ambion),
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with Biotin using BioArray HighYield RNA Transcript Labeling Kits (T7, Enzo Life Sciences)
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Intensities were determined with Microarray Suite version 5.0 (Affymetrix), normalized using GCRMA (BRB-ArrayTools v4.2.1) and differentially-expressed probe sets were determined by class comparison using unfiltered expression values with fold-change cut-off of 1.2. A P-value cut-off of 0.001 was used to keep the FDR < 20%.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bin,E,Li
| | Sample_contact_laboratory | Ernst
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth College
| | Sample_contact_address | Remsen 725
| | Sample_contact_city | Hanover
| | Sample_contact_state | New Hampshire
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1194nnn/GSM1194007/suppl/GSM1194007_04_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE49120
| | Sample_data_row_count | 45101
| | |
|
GSM1194008 | GPL1261 |
|
pro-B_meninko_rep1
|
Menin-deficient pro-B
|
age: 2-3 weeks old
tissue: bone marrow
cell type: Fraction B cells B220+CD43+HSA+BP-1-
genotype/variation: Menin-deficient
|
Gene expression data from BM Fraction B cells B220+CD43+HSA+BP-1-
Menin-deficient pro-B biological replicate 1
|
| Sample_geo_accession | GSM1194008
| | Sample_status | Public on Aug 05 2013
| | Sample_submission_date | Jul 23 2013
| | Sample_last_update_date | Aug 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) extraction of total RNA was performed and RNA was isolated using Qiagen RNeasy column and amplified using MessageAmp™II aRNA Amplification Kits (Ambion),
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with Biotin using BioArray HighYield RNA Transcript Labeling Kits (T7, Enzo Life Sciences)
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Intensities were determined with Microarray Suite version 5.0 (Affymetrix), normalized using GCRMA (BRB-ArrayTools v4.2.1) and differentially-expressed probe sets were determined by class comparison using unfiltered expression values with fold-change cut-off of 1.2. A P-value cut-off of 0.001 was used to keep the FDR < 20%.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bin,E,Li
| | Sample_contact_laboratory | Ernst
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth College
| | Sample_contact_address | Remsen 725
| | Sample_contact_city | Hanover
| | Sample_contact_state | New Hampshire
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1194nnn/GSM1194008/suppl/GSM1194008_05_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE49120
| | Sample_data_row_count | 45101
| | |
|
GSM1194009 | GPL1261 |
|
pro-B_meninko_rep2
|
Menin-deficient pro-B
|
age: 2-3 weeks old
tissue: bone marrow
cell type: Fraction B cells B220+CD43+HSA+BP-1-
genotype/variation: Menin-deficient
|
Gene expression data from BM Fraction B cells B220+CD43+HSA+BP-1-
Menin-deficient pro-B biological replicate 2
|
| Sample_geo_accession | GSM1194009
| | Sample_status | Public on Aug 05 2013
| | Sample_submission_date | Jul 23 2013
| | Sample_last_update_date | Aug 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) extraction of total RNA was performed and RNA was isolated using Qiagen RNeasy column and amplified using MessageAmp™II aRNA Amplification Kits (Ambion),
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with Biotin using BioArray HighYield RNA Transcript Labeling Kits (T7, Enzo Life Sciences)
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Intensities were determined with Microarray Suite version 5.0 (Affymetrix), normalized using GCRMA (BRB-ArrayTools v4.2.1) and differentially-expressed probe sets were determined by class comparison using unfiltered expression values with fold-change cut-off of 1.2. A P-value cut-off of 0.001 was used to keep the FDR < 20%.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bin,E,Li
| | Sample_contact_laboratory | Ernst
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth College
| | Sample_contact_address | Remsen 725
| | Sample_contact_city | Hanover
| | Sample_contact_state | New Hampshire
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1194nnn/GSM1194009/suppl/GSM1194009_06_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE49120
| | Sample_data_row_count | 45101
| | |
|
GSM1194010 | GPL1261 |
|
pro-B_meninko_rep3
|
Menin-deficient pro-B
|
age: 2-3 weeks old
tissue: bone marrow
cell type: Fraction B cells B220+CD43+HSA+BP-1-
genotype/variation: Menin-deficient
|
Gene expression data from BM Fraction B cells B220+CD43+HSA+BP-1-
Menin-deficient pro-B biological replicate 3
|
| Sample_geo_accession | GSM1194010
| | Sample_status | Public on Aug 05 2013
| | Sample_submission_date | Jul 23 2013
| | Sample_last_update_date | Aug 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) extraction of total RNA was performed and RNA was isolated using Qiagen RNeasy column and amplified using MessageAmp™II aRNA Amplification Kits (Ambion),
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with Biotin using BioArray HighYield RNA Transcript Labeling Kits (T7, Enzo Life Sciences)
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Intensities were determined with Microarray Suite version 5.0 (Affymetrix), normalized using GCRMA (BRB-ArrayTools v4.2.1) and differentially-expressed probe sets were determined by class comparison using unfiltered expression values with fold-change cut-off of 1.2. A P-value cut-off of 0.001 was used to keep the FDR < 20%.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bin,E,Li
| | Sample_contact_laboratory | Ernst
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth College
| | Sample_contact_address | Remsen 725
| | Sample_contact_city | Hanover
| | Sample_contact_state | New Hampshire
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1194nnn/GSM1194010/suppl/GSM1194010_07_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE49120
| | Sample_data_row_count | 45101
| | |
|
GSM1194011 | GPL1261 |
|
pro-B_meninko_rep4
|
Menin-deficient pro-B
|
age: 2-3 weeks old
tissue: bone marrow
cell type: Fraction B cells B220+CD43+HSA+BP-1-
genotype/variation: Menin-deficient
|
Gene expression data from BM Fraction B cells B220+CD43+HSA+BP-1-
Menin-deficient pro-B biological replicate 4
|
| Sample_geo_accession | GSM1194011
| | Sample_status | Public on Aug 05 2013
| | Sample_submission_date | Jul 23 2013
| | Sample_last_update_date | Aug 05 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen) extraction of total RNA was performed and RNA was isolated using Qiagen RNeasy column and amplified using MessageAmp™II aRNA Amplification Kits (Ambion),
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled with Biotin using BioArray HighYield RNA Transcript Labeling Kits (T7, Enzo Life Sciences)
| | Sample_hyb_protocol | Standard Affymetrix protocol
| | Sample_scan_protocol | Standard Affymetrix protocol
| | Sample_data_processing | Intensities were determined with Microarray Suite version 5.0 (Affymetrix), normalized using GCRMA (BRB-ArrayTools v4.2.1) and differentially-expressed probe sets were determined by class comparison using unfiltered expression values with fold-change cut-off of 1.2. A P-value cut-off of 0.001 was used to keep the FDR < 20%.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Bin,E,Li
| | Sample_contact_laboratory | Ernst
| | Sample_contact_department | Genetics
| | Sample_contact_institute | Dartmouth College
| | Sample_contact_address | Remsen 725
| | Sample_contact_city | Hanover
| | Sample_contact_state | New Hampshire
| | Sample_contact_zip/postal_code | 03755
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1194nnn/GSM1194011/suppl/GSM1194011_08_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE49120
| | Sample_data_row_count | 45101
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