Search results for the GEO ID: GSE4917  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM109204 | GPL96 |
|
Control(ethanol)-treated sample at 30min, biological rep1
|
MCF10A-Myc cells treated with ethanol for 30 min
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol (control) for 30 min.
|
| Sample_geo_accession | GSM109204
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with vehicle (ethanol) for 30 min.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109204/suppl/GSM109204.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109205 | GPL96 |
|
Dex-treated sample at 30min, biological rep1
|
MCF10A-Myc cells treated with dexamethasone for 30 min
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with dexamethasone for 30 min.
|
| Sample_geo_accession | GSM109205
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 30 min.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109205/suppl/GSM109205.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109206 | GPL96 |
|
Control(ethanol)-treated sample at 2hr, biological rep1
|
MCF10A-Myc cells treated with ethanol for 2hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 2hr.
|
| Sample_geo_accession | GSM109206
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 30 min.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109206/suppl/GSM109206.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109207 | GPL96 |
|
Dex-treated sample at 2hr, biological rep1
|
MCF10A-Myc cells treated with dexamethasone for 2hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with dexamethasone for 2hr.
|
| Sample_geo_accession | GSM109207
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 2hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G..
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109207/suppl/GSM109207.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109208 | GPL96 |
|
Control(ethanol)-treated sample at 4hr, biological rep1
|
MCF10A-Myc cells treated with ethanol for 4hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 4hr
|
| Sample_geo_accession | GSM109208
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 4hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109208/suppl/GSM109208.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109209 | GPL96 |
|
Dex-treated sample at 4hr, biological rep1
|
MCF10A-Myc cells treated with dexamethasone for 4hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with dexamethasone for 4hr
|
| Sample_geo_accession | GSM109209
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 4hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109209/suppl/GSM109209.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109210 | GPL96 |
|
Control(ethanol)-treated sample at 24hr, biological rep1
|
MCF10A-Myc cells treated with ethanol for 24hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 24hr
|
| Sample_geo_accession | GSM109210
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 24hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G..
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109210/suppl/GSM109210.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109211 | GPL96 |
|
Dex-treated sample at 24hr, biological rep1
|
MCF10A-Myc cells treated with dexamethasone for 24hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with dexamethasone for 24hr
|
| Sample_geo_accession | GSM109211
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone (Dex) for 24hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109211/suppl/GSM109211.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109212 | GPL96 |
|
Control(ethanol)-treated sample at 30min, biological rep2
|
MCF10A-Myc cells treated with ethanol for 30min
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 30 min.
|
| Sample_geo_accession | GSM109212
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 30 min.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109212/suppl/GSM109212.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109213 | GPL96 |
|
Dex-treated sample at 30min, biological rep2
|
MCF10A-Myc cells treated with dexamethasone for 30min
|
Genotype: unknown
Age: 35
|
Gene expression data from embryos in slow phase of cellularisation.
|
| Sample_geo_accession | GSM109213
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 30 min.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109213/suppl/GSM109213.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109214 | GPL96 |
|
Control(ethanol)-treated sample at 2hr, biological rep2
|
MCF10A-Myc cells treated with ethanol for 2hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 2 hr.
|
| Sample_geo_accession | GSM109214
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 2 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109214/suppl/GSM109214.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109215 | GPL96 |
|
Dex-treated sample at 2hr, biological rep2
|
MCF10A-Myc cells treated with dexamethasone for 2hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with dex for 2 hr.
|
| Sample_geo_accession | GSM109215
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 2 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109215/suppl/GSM109215.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109216 | GPL96 |
|
Control(ethanol)-treated sample at 4hr, biological rep2
|
MCF10A-Myc cells treated with ethanol for 4hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 4 hr.
|
| Sample_geo_accession | GSM109216
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 4 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109216/suppl/GSM109216.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109217 | GPL96 |
|
Dex-treated sample at 4hr, biological rep2
|
MCF10A-Myc cells treated with dexamethasone for 4hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with dex for 4 hr.
|
| Sample_geo_accession | GSM109217
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 4 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G..
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109217/suppl/GSM109217.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109218 | GPL96 |
|
Control(ethanol)-treated sample at 24hr, biological rep2
|
MCF10A-Myc cells treated with ethanol for 24hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 24 hr.
|
| Sample_geo_accession | GSM109218
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109218/suppl/GSM109218.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109219 | GPL96 |
|
Dex-treated sample at 24hr, biological rep2
|
MCF10A-Myc cells treated with dexamethasone for 24hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with dex for 24 hr.
|
| Sample_geo_accession | GSM109219
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109219/suppl/GSM109219.cel.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109220 | GPL96 |
|
Control(ethanol)-treated sample at 30min, biological rep3
|
MCF10A-Myc cells treated with ethanol for 30 min
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 30 min.
|
| Sample_geo_accession | GSM109220
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 30 min.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G..
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109220/suppl/GSM109220.CEL.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109221 | GPL96 |
|
Dex-treated sample at 30min, biological rep3
|
MCF10A-Myc cells treated with dexamethasone for 30 min
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with Dex for 30 min.
|
| Sample_geo_accession | GSM109221
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 30 min.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109221/suppl/GSM109221.CEL.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109222 | GPL96 |
|
Control(ethanol)-treated sample at 2hr, biological rep3
|
MCF10A-Myc cells treated with ethanol for 2hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 2 hr.
|
| Sample_geo_accession | GSM109222
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 2 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109222/suppl/GSM109222.CEL.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109223 | GPL96 |
|
Dex-treated sample at 2hr, biological rep3
|
MCF10A-Myc cells treated with dexamethasone for 2hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with Dex for 2 hr.
|
| Sample_geo_accession | GSM109223
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 2 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109223/suppl/GSM109223.CEL.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109224 | GPL96 |
|
Control(ethanol)-treated sample at 4hr, biological rep3
|
MCF10A-Myc cells treated with ethanol for 4hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 4 hr.
|
| Sample_geo_accession | GSM109224
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 4 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109224/suppl/GSM109224.CEL.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109225 | GPL96 |
|
Dex-treated sample at 4hr, biological rep3
|
MCF10A-Myc cells treated with dexamethasone for 4hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with Dex for 4 hr.
|
| Sample_geo_accession | GSM109225
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 4 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109225/suppl/GSM109225.CEL.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
|
GSM109226 | GPL96 |
|
Control(ethanol)-treated sample at 24hr, biological rep3
|
MCF10A-Myc cells treated with ethanol for 24hr
|
Genotype: unknown
Age: 35
|
Gene expression data from MCF10A-Myc cells treated with ethanol for 24 hr.
|
| Sample_geo_accession | GSM109226
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with ethanol for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G.
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109226/suppl/GSM109226.CEL.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
| | |
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GSM109227 | GPL96 |
|
Dex-treated sample at 24hr, biological rep3
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MCF10A-Myc cells treated with dexamethasone for 24hr
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Genotype: unknown
Age: 35
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Gene expression data from MCF10A-Myc cells treated with Dex for 24 hr.
|
| Sample_geo_accession | GSM109227
| | Sample_status | Public on Jun 02 2006
| | Sample_submission_date | May 17 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | MCF10A-Myc cells were subjected to 72 hrs of growth factor withdrawal followed by treatment with dexamethasone for 24 hr.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from each sample was extracted using Qiagen’s RNeasy Kit.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on Affymetrix human genome HG-U133A genechip. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip® Scanner 3000 7G..
| | Sample_data_processing | The data were analyzed and normalized Robust Multi-array Average (RMA) algorithm.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Suzanne,,Conzen
| | Sample_contact_email | sconzen@medicine.bsd.uchicago.edu
| | Sample_contact_phone | (773)834-2604
| | Sample_contact_fax | (773)834-3080
| | Sample_contact_department | Medicine
| | Sample_contact_institute | University of Chicago
| | Sample_contact_address | 5841 S. Maryland Ave, SBRI J301, MC 2115
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60637
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM109nnn/GSM109227/suppl/GSM109227.CEL.gz
| | Sample_series_id | GSE4917
| | Sample_data_row_count | 22215
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