Search results for the GEO ID: GSE49583  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1202262 | GPL570 |
|
Primary pancreatic stellate cells (PSC) treated with 8 tumor cell lines, 1h
|
primary PSC
|
primary cells: PSC (Primary pancreatic stellate cells)
|
Gene expression data _post treatment
|
| Sample_geo_accession | GSM1202262
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor-cell supernatant was added 24, 7,6,5,4,3,2, and 1 prior harvest
| | Sample_growth_protocol_ch1 | regular growth in 10 cm Petri dishes at 37oC to 70% confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.25).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202262/suppl/GSM1202262_psc_1h.CEL.gz
| | Sample_series_id | GSE49583
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202263 | GPL570 |
|
Primary pancreatic stellate cells (PSC) treated with 8 tumor cell lines, 2h
|
primary PSC
|
primary cells: PSC (Primary pancreatic stellate cells)
|
Gene expression data _post treatment
|
| Sample_geo_accession | GSM1202263
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor-cell supernatant was added 24, 7,6,5,4,3,2, and 1 prior harvest
| | Sample_growth_protocol_ch1 | regular growth in 10 cm Petri dishes at 37oC to 70% confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.25).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202263/suppl/GSM1202263_psc_2h.CEL.gz
| | Sample_series_id | GSE49583
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202264 | GPL570 |
|
Primary pancreatic stellate cells (PSC) treated with 8 tumor cell lines, 3h
|
primary PSC
|
primary cells: PSC (Primary pancreatic stellate cells)
|
Gene expression data _post treatment
|
| Sample_geo_accession | GSM1202264
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor-cell supernatant was added 24, 7,6,5,4,3,2, and 1 prior harvest
| | Sample_growth_protocol_ch1 | regular growth in 10 cm Petri dishes at 37oC to 70% confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.25).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202264/suppl/GSM1202264_psc_3h.CEL.gz
| | Sample_series_id | GSE49583
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202265 | GPL570 |
|
Primary pancreatic stellate cells (PSC) treated with 8 tumor cell lines, 4h
|
primary PSC
|
primary cells: PSC (Primary pancreatic stellate cells)
|
Gene expression data _post treatment
|
| Sample_geo_accession | GSM1202265
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor-cell supernatant was added 24, 7,6,5,4,3,2, and 1 prior harvest
| | Sample_growth_protocol_ch1 | regular growth in 10 cm Petri dishes at 37oC to 70% confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.25).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202265/suppl/GSM1202265_psc_4h.CEL.gz
| | Sample_series_id | GSE49583
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202266 | GPL570 |
|
Primary pancreatic stellate cells (PSC) treated with 8 tumor cell lines, 5h
|
primary PSC
|
primary cells: PSC (Primary pancreatic stellate cells)
|
Gene expression data _post treatment
|
| Sample_geo_accession | GSM1202266
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor-cell supernatant was added 24, 7,6,5,4,3,2, and 1 prior harvest
| | Sample_growth_protocol_ch1 | regular growth in 10 cm Petri dishes at 37oC to 70% confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.25).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202266/suppl/GSM1202266_psc_5h.CEL.gz
| | Sample_series_id | GSE49583
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202267 | GPL570 |
|
Primary pancreatic stellate cells (PSC) treated with 8 tumor cell lines, 6h
|
primary PSC
|
primary cells: PSC (Primary pancreatic stellate cells)
|
Gene expression data _post treatment
|
| Sample_geo_accession | GSM1202267
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor-cell supernatant was added 24, 7,6,5,4,3,2, and 1 prior harvest
| | Sample_growth_protocol_ch1 | regular growth in 10 cm Petri dishes at 37oC to 70% confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.25).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202267/suppl/GSM1202267_psc_6h.CEL.gz
| | Sample_series_id | GSE49583
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202268 | GPL570 |
|
Primary pancreatic stellate cells (PSC) treated with 8 tumor cell lines, 7h
|
primary PSC
|
primary cells: PSC (Primary pancreatic stellate cells)
|
Gene expression data _post treatment
|
| Sample_geo_accession | GSM1202268
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor-cell supernatant was added 24, 7,6,5,4,3,2, and 1 prior harvest
| | Sample_growth_protocol_ch1 | regular growth in 10 cm Petri dishes at 37oC to 70% confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.25).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202268/suppl/GSM1202268_psc_7h.CEL.gz
| | Sample_series_id | GSE49583
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202269 | GPL570 |
|
Primary pancreatic stellate cells (PSC) treated with 8 tumor cell lines, 24h
|
primary PSC
|
primary cells: PSC (Primary pancreatic stellate cells)
|
Gene expression data _post treatment
|
| Sample_geo_accession | GSM1202269
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor-cell supernatant was added 24, 7,6,5,4,3,2, and 1 prior harvest
| | Sample_growth_protocol_ch1 | regular growth in 10 cm Petri dishes at 37oC to 70% confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.25).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202269/suppl/GSM1202269_psc_24h.CEL.gz
| | Sample_series_id | GSE49583
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202270 | GPL570 |
|
Primary pancreatic stellate cells (PSC) treated with 8 tumor cell lines, control 24h
|
primary PSC
|
primary cells: PSC (Primary pancreatic stellate cells)
|
Gene expression data _control
|
| Sample_geo_accession | GSM1202270
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Tumor-cell supernatant was added 24, 7,6,5,4,3,2, and 1 prior harvest
| | Sample_growth_protocol_ch1 | regular growth in 10 cm Petri dishes at 37oC to 70% confluence
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.25).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202270/suppl/GSM1202270_psc_control_24h.CEL.gz
| | Sample_series_id | GSE49583
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
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