Search results for the GEO ID: GSE49584  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM1202271 | GPL570 |
|
Tumor cells (MiaPaCa2) treated with naive stellate cells (PSC), 1h
|
MiaPaCa2 cell line
|
pancreatic tumor cell line: MiaPaca2
|
MiaPaca2 post naive PSC-treatment
|
| Sample_geo_accession | GSM1202271
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stellate-cell supernatant was added 24, 7,6,5,4,3,2, and 1hour prior harvest
| | Sample_growth_protocol_ch1 | regular frowth to 70% confuence at 37oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.35).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202271/suppl/GSM1202271_tc_co_1h.CEL.gz
| | Sample_series_id | GSE49584
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202272 | GPL570 |
|
Tumor cells (MiaPaCa2) treated with naive stellate cells (PSC), 2h
|
MiaPaCa2 cell line
|
pancreatic tumor cell line: MiaPaca2
|
MiaPaca2 post naive PSC-treatment
|
| Sample_geo_accession | GSM1202272
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stellate-cell supernatant was added 24, 7,6,5,4,3,2, and 1hour prior harvest
| | Sample_growth_protocol_ch1 | regular frowth to 70% confuence at 37oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.35).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202272/suppl/GSM1202272_tc_co_2h.CEL.gz
| | Sample_series_id | GSE49584
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202273 | GPL570 |
|
Tumor cells (MiaPaCa2) treated with naive stellate cells (PSC), 3h
|
MiaPaCa2 cell line
|
pancreatic tumor cell line: MiaPaca2
|
MiaPaca2 post naive PSC-treatment
|
| Sample_geo_accession | GSM1202273
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stellate-cell supernatant was added 24, 7,6,5,4,3,2, and 1hour prior harvest
| | Sample_growth_protocol_ch1 | regular frowth to 70% confuence at 37oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.35).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202273/suppl/GSM1202273_tc_co_3h.CEL.gz
| | Sample_series_id | GSE49584
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202274 | GPL570 |
|
Tumor cells (MiaPaCa2) treated with naive stellate cells (PSC), 4h
|
MiaPaCa2 cell line
|
pancreatic tumor cell line: MiaPaca2
|
MiaPaca2 post naive PSC-treatment
|
| Sample_geo_accession | GSM1202274
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stellate-cell supernatant was added 24, 7,6,5,4,3,2, and 1hour prior harvest
| | Sample_growth_protocol_ch1 | regular frowth to 70% confuence at 37oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.35).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202274/suppl/GSM1202274_tc_co_4h.CEL.gz
| | Sample_series_id | GSE49584
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202275 | GPL570 |
|
Tumor cells (MiaPaCa2) treated with naive stellate cells (PSC), 5h
|
MiaPaCa2 cell line
|
pancreatic tumor cell line: MiaPaca2
|
MiaPaca2 post naive PSC-treatment
|
| Sample_geo_accession | GSM1202275
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stellate-cell supernatant was added 24, 7,6,5,4,3,2, and 1hour prior harvest
| | Sample_growth_protocol_ch1 | regular frowth to 70% confuence at 37oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.35).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202275/suppl/GSM1202275_tc_co_5h.CEL.gz
| | Sample_series_id | GSE49584
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202276 | GPL570 |
|
Tumor cells (MiaPaCa2) treated with naive stellate cells (PSC), 6h
|
MiaPaCa2 cell line
|
pancreatic tumor cell line: MiaPaca2
|
MiaPaca2 post naive PSC-treatment
|
| Sample_geo_accession | GSM1202276
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stellate-cell supernatant was added 24, 7,6,5,4,3,2, and 1hour prior harvest
| | Sample_growth_protocol_ch1 | regular frowth to 70% confuence at 37oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.35).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202276/suppl/GSM1202276_tc_co_6h.CEL.gz
| | Sample_series_id | GSE49584
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202277 | GPL570 |
|
Tumor cells (MiaPaCa2) treated with naive stellate cells (PSC), 7h
|
MiaPaCa2 cell line
|
pancreatic tumor cell line: MiaPaca2
|
MiaPaca2 post naive PSC-treatment
|
| Sample_geo_accession | GSM1202277
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stellate-cell supernatant was added 24, 7,6,5,4,3,2, and 1hour prior harvest
| | Sample_growth_protocol_ch1 | regular frowth to 70% confuence at 37oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.35).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202277/suppl/GSM1202277_tc_co_7h.CEL.gz
| | Sample_series_id | GSE49584
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202278 | GPL570 |
|
Tumor cells (MiaPaCa2) treated with naive stellate cells (PSC), 24h
|
MiaPaCa2 cell line
|
pancreatic tumor cell line: MiaPaca2
|
MiaPaca2 post naive PSC-treatment
|
| Sample_geo_accession | GSM1202278
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stellate-cell supernatant was added 24, 7,6,5,4,3,2, and 1hour prior harvest
| | Sample_growth_protocol_ch1 | regular frowth to 70% confuence at 37oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.35).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202278/suppl/GSM1202278_tc_co_24h.CEL.gz
| | Sample_series_id | GSE49584
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
|
GSM1202279 | GPL570 |
|
Tumor cells (MiaPaCa2) treated with naive stellate cells (PSC), control at 24h
|
MiaPaCa2 cell line
|
pancreatic tumor cell line: MiaPaca2
|
Miapaca2 control
|
| Sample_geo_accession | GSM1202279
| | Sample_status | Public on Aug 09 2013
| | Sample_submission_date | Aug 06 2013
| | Sample_last_update_date | Aug 09 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Stellate-cell supernatant was added 24, 7,6,5,4,3,2, and 1hour prior harvest
| | Sample_growth_protocol_ch1 | regular frowth to 70% confuence at 37oC
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNA kit extraction according to manufacturer's protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were processed with R using RMA normalization procedure (justRMA package), annotated with the corresponding library (hgu133plus2.db), and extracted in both unfiltered (normalized, complete set), and filtered (IQR filtering 0.35).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Matt,Zbigniew,Rogon
| | Sample_contact_email | rogon@embl.de
| | Sample_contact_phone | +49 6221 387-8140
| | Sample_contact_laboratory | Centre for Biomolecular Network Analysis
| | Sample_contact_department | SCB
| | Sample_contact_institute | EMBL
| | Sample_contact_address | Meyerhofstrasse 1
| | Sample_contact_city | Heidelberg
| | Sample_contact_zip/postal_code | 69117
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1202nnn/GSM1202279/suppl/GSM1202279_tc_co_control_24h.CEL.gz
| | Sample_series_id | GSE49584
| | Sample_series_id | GSE49588
| | Sample_data_row_count | 54675
| | |
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