Search results for the GEO ID: GSE5058  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM101095 | GPL570 |
|
small airways, non-smoker 001, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 41
Sex: M
Ethnic group: black
Smoking Status: non-smoker
|
small airways, non-smoker 001, RMA and MAS
|
| Sample_geo_accession | GSM101095
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101095/suppl/GSM101095.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101095/suppl/GSM101095.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101096 | GPL570 |
|
small airways, non-smoker 004, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 35
sex: M
ethnic group: black
smoking status: non-smoker
|
small airways, non-smoker 004, RMA and MAS
|
| Sample_geo_accession | GSM101096
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101096/suppl/GSM101096.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101096/suppl/GSM101096.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101097 | GPL570 |
|
small airways, non-smoker 002, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 61
sex: M
ethnic group: white
smoking status: non-smoker
|
small airways, non-smoker 002, RMA and MAS
|
| Sample_geo_accession | GSM101097
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101097/suppl/GSM101097.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101097/suppl/GSM101097.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101098 | GPL570 |
|
small airways, non-smoker 003, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 37
sex: F
ethnic group: black
smoking status: non-smoker
|
small airways, non-smoker 003, RMA and MAS
|
| Sample_geo_accession | GSM101098
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101098/suppl/GSM101098.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101098/suppl/GSM101098.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101099 | GPL570 |
|
small airways, non-smoker 013, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 45
Sex: M
Ethnic group: hispanic
Smoking Status: non-smoker
|
small airways, non-smoker 013, RMA and MAS
|
| Sample_geo_accession | GSM101099
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G .
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101099/suppl/GSM101099.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101099/suppl/GSM101099.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_data_row_count | 54675
| | |
|
GSM101100 | GPL570 |
|
small airways, non-smoker 006, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 47
sex: M
ethnic group: black
smoking status: non-smoker
|
small airways, non-smoker 006, RMA and MAS
|
| Sample_geo_accession | GSM101100
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101100/suppl/GSM101100.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101100/suppl/GSM101100.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101101 | GPL570 |
|
small airways, non-smoker 021, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 38
sex: M
ethnic group: hispanic
smoking status: non-smoker
|
small airways, non-smoker 021, RMA and MAS
|
| Sample_geo_accession | GSM101101
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101101/suppl/GSM101101.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101101/suppl/GSM101101.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101102 | GPL570 |
|
small airways, non-smoker 019, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 49
sex: F
ethnic group: white
smoking status: non-smoker
|
small airways, non-smoker 019, RMA and MAS
|
| Sample_geo_accession | GSM101102
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101102/suppl/GSM101102.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101102/suppl/GSM101102.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101103 | GPL570 |
|
small airways, non-smoker 014, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 45
sex: M
ethnic group: white
smoking status: non-smoker
|
small airways, non-smoker 014, RMA and MAS
|
| Sample_geo_accession | GSM101103
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101103/suppl/GSM101103.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101103/suppl/GSM101103.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101104 | GPL570 |
|
small airways, non-smoker 008, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 36
sex: M
ethnic group: white
smoking status: non-smoker
|
small airways, non-smoker 008, RMA and MAS
|
| Sample_geo_accession | GSM101104
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101104/suppl/GSM101104.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101104/suppl/GSM101104.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101105 | GPL570 |
|
small airways, non-smoker 015, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 38
sex: M
ethnic group: black
smoking status: non-smoker
|
small airways, non-smoker 015, RMA and MAS
|
| Sample_geo_accession | GSM101105
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101105/suppl/GSM101105.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101105/suppl/GSM101105.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101106 | GPL570 |
|
small airways, non-smoker 005, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 35
sex: M
ethnic group: black
smoking status: non-smoker
|
small airways, non-smoker 005, RMA and MAS
|
| Sample_geo_accession | GSM101106
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101106/suppl/GSM101106.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101106/suppl/GSM101106.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE7832
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101107 | GPL570 |
|
small airways, smoker 002, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 46
sex: M
ethnic group: white
smoking status: smoker, 21 pack-years
|
small airways, smoker 002, RMA and MAS
|
| Sample_geo_accession | GSM101107
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G .
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101107/suppl/GSM101107.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101107/suppl/GSM101107.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101108 | GPL570 |
|
small airways, smoker 003, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 40
Sex: F
Ethnic group: black
Smoking Status: smoker, 25 pack-years
|
small airways, smoker 003, RMA and MAS
|
| Sample_geo_accession | GSM101108
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G .
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101108/suppl/GSM101108.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101108/suppl/GSM101108.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE11906
| | Sample_data_row_count | 54675
| | |
|
GSM101109 | GPL570 |
|
small airways, smoker 027, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 44
Sex: M
Ethnic group: white
Smoking Status: smoker, 45 pack-years
|
small airways, smoker 027, RMA and MAS
|
| Sample_geo_accession | GSM101109
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101109/suppl/GSM101109.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101109/suppl/GSM101109.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM101110 | GPL570 |
|
small airways, smoker 033, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 43
Sex: M
Ethnic group: white
Smoking Status: smoker, 15 pack-years
|
small airways, smoker 033, RMA and MAS
|
| Sample_geo_accession | GSM101110
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101110/suppl/GSM101110.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101110/suppl/GSM101110.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_data_row_count | 54675
| | |
|
GSM101111 | GPL570 |
|
small airways, smoker 001, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 37
sex: F
ethnic group: black
smoking status: smoker, 23 pack-years
|
small airways, smoker 001, RMA and MAS
|
| Sample_geo_accession | GSM101111
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101111/suppl/GSM101111.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101111/suppl/GSM101111.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101112 | GPL570 |
|
small airways, smoker 023, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 41
Sex: M
Ethnic group: black
Smoking Status: smoker, 20 pack-years
|
small airways, smoker 023, RMA and MAS
|
| Sample_geo_accession | GSM101112
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G .
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101112/suppl/GSM101112.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101112/suppl/GSM101112.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE11906
| | Sample_data_row_count | 54675
| | |
|
GSM101113 | GPL570 |
|
small airways, smoker 048, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 45
sex: M
ethnic group: black
smoking status: smoker, 28 pack-years
|
small airways, smoker 048, RMA and MAS
|
| Sample_geo_accession | GSM101113
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101113/suppl/GSM101113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101113/suppl/GSM101113.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101114 | GPL570 |
|
small airways, smoker 041, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 48
sex: M
ethnic group: white
smoking status: smoker, 20 pack-years
|
small airways, smoker 041, RMA and MAS
|
| Sample_geo_accession | GSM101114
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101114/suppl/GSM101114.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101114/suppl/GSM101114.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101115 | GPL570 |
|
small airways, smoker 044, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 50
sex: M
ethnic group: white
smoking status: smoker, 38 pack-years
|
small airways, smoker 044, RMA and MAS
|
| Sample_geo_accession | GSM101115
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101115/suppl/GSM101115.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101115/suppl/GSM101115.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE19667
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM101116 | GPL570 |
|
small airways, smoker 049, RMA and MAS
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 46
sex: F
ethnic group: black
smoking status: smoker, 23 pack-years
|
small airways, smoker 049, RMA and MAS
|
| Sample_geo_accession | GSM101116
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Mar 20 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G.
| | Sample_data_processing | The CEL files were generated using Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101116/suppl/GSM101116.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM101nnn/GSM101116/suppl/GSM101116.CHP.gz
| | Sample_series_id | GSE4498
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE19667
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM114089 | GPL570 |
|
small airways, smoker 058, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 56
sex: M
ethnic group: black
smoking status: smoker, 80 pack-years
|
small airways, smoker 058, MAS5
|
| Sample_geo_accession | GSM114089
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114089/suppl/GSM114089.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114089/suppl/GSM114089.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE19667
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM114090 | GPL570 |
|
small airways, smoker 063, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 59
sex: M
ethnic group: white
smoking status: smoker, 60 pack-years
|
small airways, smoker 063, MAS5
|
| Sample_geo_accession | GSM114090
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114090/suppl/GSM114090.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114090/suppl/GSM114090.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11784
| | Sample_series_id | GSE11906
| | Sample_series_id | GSE11952
| | Sample_series_id | GSE13931
| | Sample_series_id | GSE19407
| | Sample_series_id | GSE19667
| | Sample_series_id | GSE20257
| | Sample_data_row_count | 54675
| | |
|
GSM114091 | GPL570 |
|
small airways, COPD 002, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 39
Sex: M
Ethnic group: black
Smoking Status: COPD, GOLD-0, 13 pack-years
|
small airways, COPD 002, MAS5
|
| Sample_geo_accession | GSM114091
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114091/suppl/GSM114091.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114091/suppl/GSM114091.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
GSM114092 | GPL570 |
|
small airways, COPD 008, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 47
Sex: M
Ethnic group: white
Smoking Status: COPD, GOLD-I, 50 pack-years
|
small airways, COPD 008, MAS5
|
| Sample_geo_accession | GSM114092
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114092/suppl/GSM114092.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114092/suppl/GSM114092.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11906
| | Sample_data_row_count | 54675
| | |
|
GSM114093 | GPL570 |
|
small airways, COPD 012, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
age: 47
sex: M
ethnic group: black
smoking status: COPD, GOLD-II, 33 pack-years
|
small airways, COPD 012, MAS5
|
| Sample_geo_accession | GSM114093
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 12 2009
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114093/suppl/GSM114093.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114093/suppl/GSM114093.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE11784
| | Sample_data_row_count | 54675
| | |
|
GSM114094 | GPL570 |
|
small airways, COPD 015, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 52
Sex: M
Ethnic group: white
Smoking Status: COPD, GOLD-II, 18 pack-years
|
small airways, COPD 015, MAS5
|
| Sample_geo_accession | GSM114094
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114094/suppl/GSM114094.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114094/suppl/GSM114094.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11906
| | Sample_data_row_count | 54675
| | |
|
GSM114095 | GPL570 |
|
small airways, COPD 020, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 57
Sex: M
Ethnic group: white
Smoking Status: COPD, GOLD-I, 20 pack-years
|
small airways, COPD 020, MAS5
|
| Sample_geo_accession | GSM114095
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Jun 05 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114095/suppl/GSM114095.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114095/suppl/GSM114095.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_series_id | GSE8545
| | Sample_series_id | GSE11906
| | Sample_data_row_count | 54675
| | |
|
GSM114096 | GPL570 |
|
small airways, COPD 021, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 54
Sex: F
Ethnic group: white
Smoking Status: COPD, GOLD-0, 20 pack-years
|
small airways, COPD 021, MAS5
|
| Sample_geo_accession | GSM114096
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114096/suppl/GSM114096.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114096/suppl/GSM114096.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
GSM114098 | GPL570 |
|
small airways, early-COPD 009, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 61
Sex: M
Ethnic group: black
Smoking Status: early-COPD, 20 pack-years
|
small airways, early-COPD 009, MAS5
|
| Sample_geo_accession | GSM114098
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114098/suppl/GSM114098.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114098/suppl/GSM114098.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
GSM114099 | GPL570 |
|
small airways, early-COPD 012, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 48
Sex: M
Ethnic group: black
Smoking Status: early-COPD, 12 pack-years
|
small airways, early-COPD 012, MAS5
|
| Sample_geo_accession | GSM114099
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114099/suppl/GSM114099.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114099/suppl/GSM114099.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
GSM114100 | GPL570 |
|
small airways, early-COPD 020, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 59
Sex: F
Ethnic group: black
Smoking Status: early-COPD, 30 pack-years
|
small airways, early-COPD 020, MAS5
|
| Sample_geo_accession | GSM114100
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114100/suppl/GSM114100.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114100/suppl/GSM114100.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
GSM114101 | GPL570 |
|
small airways, early-COPD 037, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 45
Sex: F
Ethnic group: white
Smoking Status: early-COPD, 43 pack-years
|
small airways, early-COPD 037, MAS5
|
| Sample_geo_accession | GSM114101
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114101/suppl/GSM114101.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114101/suppl/GSM114101.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
GSM114102 | GPL570 |
|
small airways, early-COPD 045, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 55
Sex: F
Ethnic group: white
Smoking Status: early-COPD, 31 pack-years
|
small airways, early-COPD 045, MAS5
|
| Sample_geo_accession | GSM114102
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114102/suppl/GSM114102.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114102/suppl/GSM114102.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
GSM114103 | GPL570 |
|
small airways, early-COPD 054, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 41
Sex: M
Ethnic group: white
Smoking Status: early-COPD, 50 pack-years
|
small airways, early-COPD 054, MAS5
|
| Sample_geo_accession | GSM114103
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114103/suppl/GSM114103.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114103/suppl/GSM114103.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
GSM114104 | GPL570 |
|
small airways, early-COPD 064, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 52
Sex: M
Ethnic group: hispanic
Smoking Status: early-COPD, 90 pack-years
|
small airways, early-COPD 064, MAS5
|
| Sample_geo_accession | GSM114104
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114104/suppl/GSM114104.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114104/suppl/GSM114104.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
GSM114105 | GPL570 |
|
small airways, early-COPD 086, MAS5
|
airway epithelial cells obtained by bronchoscopy and brushing
|
Age: 59
Sex: M
Ethnic group: black
Smoking Status: early-COPD, 20 pack-years
|
small airways, early-COPD 086, MAS5
|
| Sample_geo_accession | GSM114105
| | Sample_status | Public on Nov 21 2006
| | Sample_submission_date | Jun 12 2006
| | Sample_last_update_date | Nov 21 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114105/suppl/GSM114105.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM114nnn/GSM114105/suppl/GSM114105.CHP.gz
| | Sample_series_id | GSE5058
| | Sample_series_id | GSE5060
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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