Search results for the GEO ID: GSE5225  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM118361 | GPL570 |
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Mammary gland, control, biological repl 1
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OCUBM
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obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells treated without expression vectors.
|
| Sample_geo_accession | GSM118361
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Jul 03 2006
| | Sample_last_update_date | Jun 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| | Sample_growth_protocol_ch1 | DMEM with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayumi,,Sugimoto
| | Sample_contact_email | m0komats@nlbc.go.jp
| | Sample_contact_institute | National Livstock Breeding Center
| | Sample_contact_address | Odakuraha1
| | Sample_contact_city | Nishigo
| | Sample_contact_zip/postal_code | 961-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118361/suppl/GSM118361.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118361/suppl/GSM118361.EXP.gz
| | Sample_series_id | GSE5225
| | Sample_series_id | GSE5231
| | Sample_data_row_count | 54675
| | |
|
GSM118362 | GPL570 |
|
Mammary gland, control, biological repl 2
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells treated without expression vectors.
|
| Sample_geo_accession | GSM118362
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Jul 03 2006
| | Sample_last_update_date | Jun 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| | Sample_growth_protocol_ch1 | DMEM with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayumi,,Sugimoto
| | Sample_contact_email | m0komats@nlbc.go.jp
| | Sample_contact_institute | National Livstock Breeding Center
| | Sample_contact_address | Odakuraha1
| | Sample_contact_city | Nishigo
| | Sample_contact_zip/postal_code | 961-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118362/suppl/GSM118362.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118362/suppl/GSM118362.EXP.gz
| | Sample_series_id | GSE5225
| | Sample_series_id | GSE5231
| | Sample_data_row_count | 54675
| | |
|
GSM118363 | GPL570 |
|
Mammary gland, IGF1R-overexpressed, biological rep1
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells transfected with IGF1R.
|
| Sample_geo_accession | GSM118363
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Jul 03 2006
| | Sample_last_update_date | Jun 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| | Sample_growth_protocol_ch1 | DMEM with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayumi,,Sugimoto
| | Sample_contact_email | m0komats@nlbc.go.jp
| | Sample_contact_institute | National Livstock Breeding Center
| | Sample_contact_address | Odakuraha1
| | Sample_contact_city | Nishigo
| | Sample_contact_zip/postal_code | 961-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118363/suppl/GSM118363.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118363/suppl/GSM118363.EXP.gz
| | Sample_series_id | GSE5225
| | Sample_series_id | GSE5231
| | Sample_data_row_count | 54675
| | |
|
GSM118364 | GPL570 |
|
Mammary gland, IGF1R-overexpressed, biological rep2
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells transfected with IGF1R.
|
| Sample_geo_accession | GSM118364
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Jul 03 2006
| | Sample_last_update_date | Jun 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| | Sample_growth_protocol_ch1 | DMEM with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayumi,,Sugimoto
| | Sample_contact_email | m0komats@nlbc.go.jp
| | Sample_contact_institute | National Livstock Breeding Center
| | Sample_contact_address | Odakuraha1
| | Sample_contact_city | Nishigo
| | Sample_contact_zip/postal_code | 961-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118364/suppl/GSM118364.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118364/suppl/GSM118364.EXP.gz
| | Sample_series_id | GSE5225
| | Sample_series_id | GSE5231
| | Sample_data_row_count | 54675
| | |
|
GSM118365 | GPL570 |
|
Mammary gland, LPS-treated, biological rep1
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells treated with LPS.
|
| Sample_geo_accession | GSM118365
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Jul 03 2006
| | Sample_last_update_date | Jun 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen) and LPS (SIGMA).
| | Sample_growth_protocol_ch1 | DMEM with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayumi,,Sugimoto
| | Sample_contact_email | m0komats@nlbc.go.jp
| | Sample_contact_institute | National Livstock Breeding Center
| | Sample_contact_address | Odakuraha1
| | Sample_contact_city | Nishigo
| | Sample_contact_zip/postal_code | 961-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118365/suppl/GSM118365.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118365/suppl/GSM118365.EXP.gz
| | Sample_series_id | GSE5225
| | Sample_series_id | GSE5231
| | Sample_data_row_count | 54675
| | |
|
GSM118366 | GPL570 |
|
Mammary gland, LPS-treated, biological rep2
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells treated with LPS.
|
| Sample_geo_accession | GSM118366
| | Sample_status | Public on Jun 30 2009
| | Sample_submission_date | Jul 03 2006
| | Sample_last_update_date | Jun 23 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen) and LPS (SIGMA).
| | Sample_growth_protocol_ch1 | DMEM with 10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Mayumi,,Sugimoto
| | Sample_contact_email | m0komats@nlbc.go.jp
| | Sample_contact_institute | National Livstock Breeding Center
| | Sample_contact_address | Odakuraha1
| | Sample_contact_city | Nishigo
| | Sample_contact_zip/postal_code | 961-8511
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118366/suppl/GSM118366.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118366/suppl/GSM118366.EXP.gz
| | Sample_series_id | GSE5225
| | Sample_series_id | GSE5231
| | Sample_data_row_count | 54675
| | |
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