Search results for the GEO ID: GSE5231 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM118358 | GPL570 |
|
Mammary gland, control, biological rep1
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells treated without expression vectors.
|
Sample_geo_accession | GSM118358
| Sample_status | Public on Jun 30 2009
| Sample_submission_date | Jul 03 2006
| Sample_last_update_date | Jun 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| Sample_growth_protocol_ch1 | DMEM with 10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| Sample_platform_id | GPL570
| Sample_contact_name | Mayumi,,Sugimoto
| Sample_contact_email | m0komats@nlbc.go.jp
| Sample_contact_institute | National Livstock Breeding Center
| Sample_contact_address | Odakuraha1
| Sample_contact_city | Nishigo
| Sample_contact_zip/postal_code | 961-8511
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118358/suppl/GSM118358.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118358/suppl/GSM118358.EXP.gz
| Sample_series_id | GSE5224
| Sample_series_id | GSE5231
| Sample_data_row_count | 54675
| |
|
GSM118359 | GPL570 |
|
Mammary gland, 12G FEZL-overexpressed, biological rep1
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells transfected with 12G FEZL.
|
Sample_geo_accession | GSM118359
| Sample_status | Public on Jun 30 2009
| Sample_submission_date | Jul 03 2006
| Sample_last_update_date | Jun 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| Sample_growth_protocol_ch1 | DMEM with 10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| Sample_platform_id | GPL570
| Sample_contact_name | Mayumi,,Sugimoto
| Sample_contact_email | m0komats@nlbc.go.jp
| Sample_contact_institute | National Livstock Breeding Center
| Sample_contact_address | Odakuraha1
| Sample_contact_city | Nishigo
| Sample_contact_zip/postal_code | 961-8511
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118359/suppl/GSM118359.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118359/suppl/GSM118359.EXP.gz
| Sample_series_id | GSE5224
| Sample_series_id | GSE5231
| Sample_data_row_count | 54675
| |
|
GSM118360 | GPL570 |
|
Mammary gland, 12G FEZL-overexpressed, biological rep2
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells transfected with 12G FEZL.
|
Sample_geo_accession | GSM118360
| Sample_status | Public on Jun 30 2009
| Sample_submission_date | Jul 03 2006
| Sample_last_update_date | Jun 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| Sample_growth_protocol_ch1 | DMEM with 10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| Sample_platform_id | GPL570
| Sample_contact_name | Mayumi,,Sugimoto
| Sample_contact_email | m0komats@nlbc.go.jp
| Sample_contact_institute | National Livstock Breeding Center
| Sample_contact_address | Odakuraha1
| Sample_contact_city | Nishigo
| Sample_contact_zip/postal_code | 961-8511
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118360/suppl/GSM118360.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118360/suppl/GSM118360.EXP.gz
| Sample_series_id | GSE5224
| Sample_series_id | GSE5231
| Sample_data_row_count | 54675
| |
|
GSM118361 | GPL570 |
|
Mammary gland, control, biological repl 1
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells treated without expression vectors.
|
Sample_geo_accession | GSM118361
| Sample_status | Public on Jun 30 2009
| Sample_submission_date | Jul 03 2006
| Sample_last_update_date | Jun 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| Sample_growth_protocol_ch1 | DMEM with 10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| Sample_platform_id | GPL570
| Sample_contact_name | Mayumi,,Sugimoto
| Sample_contact_email | m0komats@nlbc.go.jp
| Sample_contact_institute | National Livstock Breeding Center
| Sample_contact_address | Odakuraha1
| Sample_contact_city | Nishigo
| Sample_contact_zip/postal_code | 961-8511
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118361/suppl/GSM118361.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118361/suppl/GSM118361.EXP.gz
| Sample_series_id | GSE5225
| Sample_series_id | GSE5231
| Sample_data_row_count | 54675
| |
|
GSM118362 | GPL570 |
|
Mammary gland, control, biological repl 2
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells treated without expression vectors.
|
Sample_geo_accession | GSM118362
| Sample_status | Public on Jun 30 2009
| Sample_submission_date | Jul 03 2006
| Sample_last_update_date | Jun 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| Sample_growth_protocol_ch1 | DMEM with 10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| Sample_platform_id | GPL570
| Sample_contact_name | Mayumi,,Sugimoto
| Sample_contact_email | m0komats@nlbc.go.jp
| Sample_contact_institute | National Livstock Breeding Center
| Sample_contact_address | Odakuraha1
| Sample_contact_city | Nishigo
| Sample_contact_zip/postal_code | 961-8511
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118362/suppl/GSM118362.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118362/suppl/GSM118362.EXP.gz
| Sample_series_id | GSE5225
| Sample_series_id | GSE5231
| Sample_data_row_count | 54675
| |
|
GSM118363 | GPL570 |
|
Mammary gland, IGF1R-overexpressed, biological rep1
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells transfected with IGF1R.
|
Sample_geo_accession | GSM118363
| Sample_status | Public on Jun 30 2009
| Sample_submission_date | Jul 03 2006
| Sample_last_update_date | Jun 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| Sample_growth_protocol_ch1 | DMEM with 10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| Sample_platform_id | GPL570
| Sample_contact_name | Mayumi,,Sugimoto
| Sample_contact_email | m0komats@nlbc.go.jp
| Sample_contact_institute | National Livstock Breeding Center
| Sample_contact_address | Odakuraha1
| Sample_contact_city | Nishigo
| Sample_contact_zip/postal_code | 961-8511
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118363/suppl/GSM118363.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118363/suppl/GSM118363.EXP.gz
| Sample_series_id | GSE5225
| Sample_series_id | GSE5231
| Sample_data_row_count | 54675
| |
|
GSM118364 | GPL570 |
|
Mammary gland, IGF1R-overexpressed, biological rep2
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells transfected with IGF1R.
|
Sample_geo_accession | GSM118364
| Sample_status | Public on Jun 30 2009
| Sample_submission_date | Jul 03 2006
| Sample_last_update_date | Jun 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen).
| Sample_growth_protocol_ch1 | DMEM with 10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| Sample_platform_id | GPL570
| Sample_contact_name | Mayumi,,Sugimoto
| Sample_contact_email | m0komats@nlbc.go.jp
| Sample_contact_institute | National Livstock Breeding Center
| Sample_contact_address | Odakuraha1
| Sample_contact_city | Nishigo
| Sample_contact_zip/postal_code | 961-8511
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118364/suppl/GSM118364.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118364/suppl/GSM118364.EXP.gz
| Sample_series_id | GSE5225
| Sample_series_id | GSE5231
| Sample_data_row_count | 54675
| |
|
GSM118365 | GPL570 |
|
Mammary gland, LPS-treated, biological rep1
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells treated with LPS.
|
Sample_geo_accession | GSM118365
| Sample_status | Public on Jun 30 2009
| Sample_submission_date | Jul 03 2006
| Sample_last_update_date | Jun 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen) and LPS (SIGMA).
| Sample_growth_protocol_ch1 | DMEM with 10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| Sample_platform_id | GPL570
| Sample_contact_name | Mayumi,,Sugimoto
| Sample_contact_email | m0komats@nlbc.go.jp
| Sample_contact_institute | National Livstock Breeding Center
| Sample_contact_address | Odakuraha1
| Sample_contact_city | Nishigo
| Sample_contact_zip/postal_code | 961-8511
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118365/suppl/GSM118365.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118365/suppl/GSM118365.EXP.gz
| Sample_series_id | GSE5225
| Sample_series_id | GSE5231
| Sample_data_row_count | 54675
| |
|
GSM118366 | GPL570 |
|
Mammary gland, LPS-treated, biological rep2
|
OCUBM
|
obtained from RIKEN CELL BANK
|
Gene expression data from OCUBM cells treated with LPS.
|
Sample_geo_accession | GSM118366
| Sample_status | Public on Jun 30 2009
| Sample_submission_date | Jul 03 2006
| Sample_last_update_date | Jun 23 2008
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | Cells were treated with Lipofectamine2000 (Invitrogen) and LPS (SIGMA).
| Sample_growth_protocol_ch1 | DMEM with 10%FBS
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy Mini kit (QIAGEN) extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5microg total RNA (Expression Analysis Technical Manual, 2004, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Human Expression Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneArray Scanner 3000.
| Sample_data_processing | The data were analyzed with GeneChip Operating Software Ver 1.2.1.001 (GCOS) using Affymetrix default analysis settings.
| Sample_platform_id | GPL570
| Sample_contact_name | Mayumi,,Sugimoto
| Sample_contact_email | m0komats@nlbc.go.jp
| Sample_contact_institute | National Livstock Breeding Center
| Sample_contact_address | Odakuraha1
| Sample_contact_city | Nishigo
| Sample_contact_zip/postal_code | 961-8511
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118366/suppl/GSM118366.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM118nnn/GSM118366/suppl/GSM118366.EXP.gz
| Sample_series_id | GSE5225
| Sample_series_id | GSE5231
| Sample_data_row_count | 54675
| |
|
|
|
Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|