Search results for the GEO ID: GSE5372  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM122527 | GPL570 |
|
S1-0
|
Time: Day 0; Smoking status: smoker
|
Time: Day 0
Smoking status: smoker
Pack-years: 25
Age: 40
Sex: F
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: smoker
|
| Sample_geo_accession | GSM122527
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122527/suppl/GSM122527.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122528 | GPL570 |
|
NS1-0
|
Time: Day 0; Smoking status: non-smoker
|
Time: Day 0
Smoking status: non-smoker
Pack-years: 0
Age: 35
Sex: M
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: non-smoker
|
| Sample_geo_accession | GSM122528
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122528/suppl/GSM122528.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122529 | GPL570 |
|
S1-7
|
Time: Day 7; Smoking status: smoker
|
Time: Day 7
Smoking status: smoker
Pack-years: 25
Age: 40
Sex: F
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 7; Smoking status: smoker
|
| Sample_geo_accession | GSM122529
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122529/suppl/GSM122529.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122530 | GPL570 |
|
S2-0
|
Time: Day 0; Smoking status: smoker
|
Time: Day 0
Smoking status: smoker
Pack-years: 21
Age: 46
Sex: M
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: smoker
|
| Sample_geo_accession | GSM122530
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122530/suppl/GSM122530.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122531 | GPL570 |
|
NS1-7
|
Time: Day 7; Smoking status: non-smoker
|
Time: Day 7
Smoking status: non-smoker
Pack-years: 0
Age: 35
Sex: M
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 7; Smoking status: non-smoker
|
| Sample_geo_accession | GSM122531
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122531/suppl/GSM122531.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122532 | GPL570 |
|
S2-7
|
Time: Day 7; Smoking status: smoker
|
Time: Day 7
Smoking status: smoker
Pack-years: 21
Age: 46
Sex: M
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 7; Smoking status: smoker
|
| Sample_geo_accession | GSM122532
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122532/suppl/GSM122532.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122533 | GPL570 |
|
S3R-0
|
Time: Day 0; Smoking status: smoker
|
Time: Day 0
Smoking status: smoker
Pack-years: 30
Age: 44
Sex: F
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: smoker
|
| Sample_geo_accession | GSM122533
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122533/suppl/GSM122533.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122534 | GPL570 |
|
S4-0
|
Time: Day 0; Smoking status: smoker
|
Time: Day 0
Smoking status: smoker
Pack-years: 20
Age: 41
Sex: M
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: smoker
|
| Sample_geo_accession | GSM122534
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122534/suppl/GSM122534.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122535 | GPL570 |
|
S3L-0
|
Time: Day 0; Smoking status: smoker
|
Time: Day 0
Smoking status: smoker
Pack-years: 30
Age: 44
Sex: F
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: smoker
|
| Sample_geo_accession | GSM122535
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122535/suppl/GSM122535.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122536 | GPL570 |
|
S3R-7
|
Time: Day 7; Smoking status: smoker
|
Time: Day 7
Smoking status: smoker
Pack-years: 30
Age: 44
Sex: F
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 7; Smoking status: smoker
|
| Sample_geo_accession | GSM122536
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122536/suppl/GSM122536.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122537 | GPL570 |
|
S4-14
|
Time: Day 14; Smoking status: smoker
|
Time: Day 14
Smoking status: smoker
Pack-years: 20
Age: 41
Sex: M
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 14; Smoking status: smoker
|
| Sample_geo_accession | GSM122537
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122537/suppl/GSM122537.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122538 | GPL570 |
|
S3L-14
|
Time: Day 14; Smoking status: smoker
|
Time: Day 14
Smoking status: smoker
Pack-years: 30
Age: 44
Sex: F
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 14; Smoking status: smoker
|
| Sample_geo_accession | GSM122538
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122538/suppl/GSM122538.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122539 | GPL570 |
|
NS2-0
|
Time: Day 0; Smoking status: non-smoker
|
Time: Day 0
Smoking status: non-smoker
Pack-years: 0
Age: 36
Sex: M
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: non-smoker
|
| Sample_geo_accession | GSM122539
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122539/suppl/GSM122539.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122540 | GPL570 |
|
NS2-7
|
Time: Day 7; Smoking status: non-smoker
|
Time: Day 7
Smoking status: non-smoker
Pack-years: 0
Age: 36
Sex: M
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 7; Smoking status: non-smoker
|
| Sample_geo_accession | GSM122540
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122540/suppl/GSM122540.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122541 | GPL570 |
|
NS3-0
|
Time: Day 0; Smoking status: non-smoker
|
Time: Day 0
Smoking status: non-smoker
Pack-years: 0
Age: 40
Sex: M
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: non-smoker
|
| Sample_geo_accession | GSM122541
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122541/suppl/GSM122541.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122542 | GPL570 |
|
NS3-7
|
Time: Day 7; Smoking status: non-smoker
|
Time: Day 7
Smoking status: non-smoker
Pack-years: 0
Age: 40
Sex: M
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 7; Smoking status: non-smoker
|
| Sample_geo_accession | GSM122542
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122542/suppl/GSM122542.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122543 | GPL570 |
|
NS3-14
|
Time: Day 14; Smoking status: non-smoker
|
Time: Day 14
Smoking status: non-smoker
Pack-years: 0
Age: 40
Sex: M
Ethnic group: white
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 14; Smoking status: non-smoker
|
| Sample_geo_accession | GSM122543
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122543/suppl/GSM122543.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122544 | GPL570 |
|
NS4-0
|
Time: Day 0; Smoking status: non-smoker
|
Time: Day 0
Smoking status: non-smoker
Pack-years: 0
Age: 35
Sex: M
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: non-smoker
|
| Sample_geo_accession | GSM122544
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122544/suppl/GSM122544.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122545 | GPL570 |
|
S5-0
|
Time: Day 0; Smoking status: smoker
|
Time: Day 0
Smoking status: smoker
Pack-years: 23
Age: 46
Sex: F
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 0; Smoking status: smoker
|
| Sample_geo_accession | GSM122545
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122545/suppl/GSM122545.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122546 | GPL570 |
|
NS4-14
|
Time: Day 14; Smoking status: non-smoker
|
Time: Day 14
Smoking status: non-smoker
Pack-years: 0
Age: 35
Sex: M
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 14; Smoking status: non-smoker
|
| Sample_geo_accession | GSM122546
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122546/suppl/GSM122546.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122547 | GPL570 |
|
S5-7
|
Time: Day 7; Smoking status: smoker
|
Time: Day 7
Smoking status: smoker
Pack-years: 23
Age: 46
Sex: F
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 7; Smoking status: smoker
|
| Sample_geo_accession | GSM122547
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122547/suppl/GSM122547.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
GSM122548 | GPL570 |
|
S5-14
|
Time: Day 14; Smoking status: smoker
|
Time: Day 14
Smoking status: smoker
Pack-years: 23
Age: 46
Sex: F
Ethnic group: black
|
airway epithelial cells obtained by bronchoscopy and brushing
Time: Day 14; Smoking status: smoker
|
| Sample_geo_accession | GSM122548
| | Sample_status | Public on Dec 12 2006
| | Sample_submission_date | Jul 21 2006
| | Sample_last_update_date | Dec 12 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 microg total RNA (Expression Analysis Technical Manual, 701022 Rev.2, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the GeneChip Scanner 3000 7G
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) and Robust Multi-array Average (RMA).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yael,,Strulovici-Barel
| | Sample_contact_email | yas2003@med.cornell.edu
| | Sample_contact_laboratory | Crystal
| | Sample_contact_department | Department of Genetic Medicine
| | Sample_contact_institute | Weill Cornell Medical College
| | Sample_contact_address | 1300 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10021
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM122nnn/GSM122548/suppl/GSM122548.CEL.gz
| | Sample_series_id | GSE5372
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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