Search results for the GEO ID: GSE5390  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM123264 | GPL96 |
|
brain_Down_syndrome_sampleid_jg1734
|
human post-mortem brain tissue, Down syndrome
|
Disease_status: Down syndrome
Age (years): 56
Gender: Female
Post mortem interval (hours): 6
Braak stage: VI
Cause of death: Unknown
|
none
|
| Sample_geo_accession | GSM123264
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Prof. Anthony Holland, Cambridge Brain Bank, Department of Pathology, Addenbrooke's Hospital, University of Cambridge, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123264/suppl/GSM123264.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123265 | GPL96 |
|
brain_Down_syndrome_sampleid_jg1737
|
human post-mortem brain tissue, Down syndrome
|
Disease_status: Down syndrome
Age (years): 76
Gender: Female
Post mortem interval (hours): 18
Braak stage: VI
Cause of death: Unknown
|
none
|
| Sample_geo_accession | GSM123265
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Prof. Anthony Holland, Cambridge Brain Bank, Department of Pathology, Addenbrooke's Hospital, University of Cambridge, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123265/suppl/GSM123265.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123266 | GPL96 |
|
brain_Down_syndrome_sampleid_jg1738
|
human post-mortem brain tissue, Down syndrome
|
Disease_status: Down syndrome
Age (years): 47
Gender: Female
Post mortem interval (hours): 8
Braak stage: II
Cause of death: Unknown
|
none
|
| Sample_geo_accession | GSM123266
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Prof. Anthony Holland, Cambridge Brain Bank, Department of Pathology, Addenbrooke's Hospital, University of Cambridge, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123266/suppl/GSM123266.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123267 | GPL96 |
|
brain_Down_syndrome_sampleid_jg1739
|
human post-mortem brain tissue, Down syndrome
|
Disease_status: Down syndrome
Age (years): 52
Gender: Male
Post mortem interval (hours): 24
Braak stage: VI
Cause of death: Bronchopnuemonia
|
none
|
| Sample_geo_accession | GSM123267
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Prof. Anthony Holland, Cambridge Brain Bank, Department of Pathology, Addenbrooke's Hospital, University of Cambridge, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123267/suppl/GSM123267.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123268 | GPL96 |
|
brain_Down_syndrome_sampleid_jg1740
|
human post-mortem brain tissue, Down syndrome
|
Disease_status: Down syndrome
Age (years): 61
Gender: Female
Post mortem interval (hours): Unknown
Braak stage: Unknown
Cause of death: Unknown
|
none
|
| Sample_geo_accession | GSM123268
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Prof. Anthony Holland, Cambridge Brain Bank, Department of Pathology, Addenbrooke's Hospital, University of Cambridge, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123268/suppl/GSM123268.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123269 | GPL96 |
|
brain_Down_syndrome_sampleid_jg1741
|
human post-mortem brain tissue, Down syndrome
|
Disease_status: Down syndrome
Age (years): 55
Gender: Male
Post mortem interval (hours): Unknown
Braak stage: Unknown
Cause of death: Unknown
|
none
|
| Sample_geo_accession | GSM123269
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Prof. Anthony Holland, Cambridge Brain Bank, Department of Pathology, Addenbrooke's Hospital, University of Cambridge, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123269/suppl/GSM123269.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123270 | GPL96 |
|
brain_Down_syndrome_sampleid_jg1742
|
human post-mortem brain tissue, Down syndrome
|
Disease_status: Down syndrome
Age (years): 63
Gender: Male
Post mortem interval (hours): Unknown
Braak stage: Unknown
Cause of death: Unknown
|
none
|
| Sample_geo_accession | GSM123270
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Prof. Anthony Holland, Cambridge Brain Bank, Department of Pathology, Addenbrooke's Hospital, University of Cambridge, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123270/suppl/GSM123270.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123271 | GPL96 |
|
brain_healthy_control_sampleid_jg1744
|
human post-mortem brain tissue, healthy control
|
Disease_status: Healthy control
Age (years): 54
Gender: Male
Post mortem interval (hours): 10
Braak stage: II
Cause of death: Aortic aneurysm
|
none
|
| Sample_geo_accession | GSM123271
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Prof. Anthony Holland, Cambridge Brain Bank, Department of Pathology, Addenbrooke's Hospital, University of Cambridge, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123271/suppl/GSM123271.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123272 | GPL96 |
|
brain_healthy_control_sampleid_jg1745
|
human post-mortem brain tissue, healthy control
|
Disease_status: Healthy control
Age (years): 61
Gender: Female
Post mortem interval (hours): 30
Braak stage: 0
Cause of death: Lung cancer
|
none
|
| Sample_geo_accession | GSM123272
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Prof. Anthony Holland, Cambridge Brain Bank, Department of Pathology, Addenbrooke's Hospital, University of Cambridge, UK
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123272/suppl/GSM123272.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123273 | GPL96 |
|
brain_control_sampleid_mr275
|
human post-mortem brain tissue, healthy control
|
Disease_status: Healthy control
Age (years): 59
Gender: Male
Post mortem interval (hours): 47
Braak stage: Unknown
Cause of death: Cardiac
|
none
|
| Sample_geo_accession | GSM123273
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Dr E Fuller Torrey, Stanley Medical Research Institute, 8401 Connecticut Avenue, Suite 200, Chevy Chase, Maryland, 20815, USA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123273/suppl/GSM123273.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123274 | GPL96 |
|
brain_control_sampleid_mr276
|
human post-mortem brain tissue, healthy control
|
Disease_status: Healthy control
Age (years): 45
Gender: Male
Post mortem interval (hours): 29
Braak stage: Unknown
Cause of death: Cardiac
|
none
|
| Sample_geo_accession | GSM123274
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Dr E Fuller Torrey, Stanley Medical Research Institute, 8401 Connecticut Avenue, Suite 200, Chevy Chase, Maryland, 20815, USA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123274/suppl/GSM123274.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123275 | GPL96 |
|
brain_control_sampleid_mr283
|
human post-mortem brain tissue, healthy control
|
Disease_status: Healthy control
Age (years): 34
Gender: Male
Post mortem interval (hours): 22
Braak stage: Unknown
Cause of death: Cardiac
|
none
|
| Sample_geo_accession | GSM123275
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Dr E Fuller Torrey, Stanley Medical Research Institute, 8401 Connecticut Avenue, Suite 200, Chevy Chase, Maryland, 20815, USA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123275/suppl/GSM123275.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123276 | GPL96 |
|
brain_control_sampleid_mr284
|
human post-mortem brain tissue, healthy control
|
Disease_status: Healthy control
Age (years): 32
Gender: Male
Post mortem interval (hours): 24
Braak stage: Unknown
Cause of death: Cardiac
|
none
|
| Sample_geo_accession | GSM123276
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Dr E Fuller Torrey, Stanley Medical Research Institute, 8401 Connecticut Avenue, Suite 200, Chevy Chase, Maryland, 20815, USA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123276/suppl/GSM123276.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123277 | GPL96 |
|
brain_control_sampleid_mr523
|
human post-mortem brain tissue, healthy control
|
Disease_status: Healthy control
Age (years): 52
Gender: Male
Post mortem interval (hours): 28
Braak stage: Unknown
Cause of death: Cardiac
|
none
|
| Sample_geo_accession | GSM123277
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Dr E Fuller Torrey, Stanley Medical Research Institute, 8401 Connecticut Avenue, Suite 200, Chevy Chase, Maryland, 20815, USA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123277/suppl/GSM123277.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
GSM123278 | GPL96 |
|
brain_control_sampleid_mr951
|
human post-mortem brain tissue, healthy control
|
Disease_status: Healthy control
Age (years): 45
Gender: Male
Post mortem interval (hours): 18
Braak stage: Unknown
Cause of death: Cardiac
|
none
|
| Sample_geo_accession | GSM123278
| | Sample_status | Public on Jul 27 2007
| | Sample_submission_date | Jul 25 2006
| | Sample_last_update_date | Jul 27 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Dr E Fuller Torrey, Stanley Medical Research Institute, 8401 Connecticut Avenue, Suite 200, Chevy Chase, Maryland, 20815, USA
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from human postmortem brain tissue using Trizol (Invitrogen, USA) or Tri reagent (Sigma, UK) total RNA isolation kits according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Double-stranded cDNA was synthesised from 5 micrograms of total RNA using Superscript II double-stranded cDNA synthesis kit (Invitrogen, USA), purified, then in-vitro transcribed and labelled using BioArray HighYield RNA transcript Labeling Kit (Enzo Life Sciences, USA)
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridised to Affymetrix Human Genome 133A GeneChips for 16 hours at 45oC with constant rotation at 60rpm. Chips were washed and stained according to manufacturer's instructions using the Affymetrix GeneChip Fluidics Station 400.
| | Sample_scan_protocol | Affymetrix HG-U133A GeneChips were scanned with the Agilent GeneArray Scanner
| | Sample_data_processing | The raw data (CEL files) were read into R statistical package and normalised using the robust multi-chip average (RMA) method (Irizarray et al, 'Exploration, normalization and summaries of high density oligonucleotide array probe level data', Biostatistics, 2003).
| | Sample_platform_id | GPL96
| | Sample_contact_name | Sabine,,Bahn
| | Sample_contact_email | sb209@cam.ac.uk
| | Sample_contact_laboratory | Cambridge Centre for Neuropsychiatric Research
| | Sample_contact_institute | University of Cambridge
| | Sample_contact_address | Tennis Court Road
| | Sample_contact_city | Cambridge
| | Sample_contact_zip/postal_code | CB2 1QT
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM123nnn/GSM123278/suppl/GSM123278.cel.gz
| | Sample_series_id | GSE5390
| | Sample_data_row_count | 22283
| | |
|
| |
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