Search results for the GEO ID: GSE5486 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM126417 | GPL570 |
|
LS180_Caff+Act
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LS180 cell line treated with Caffeine and Actinomycin D
|
Morphology: Epithelial
Human Caucasian colon adenocarcinoma
|
None
|
Sample_geo_accession | GSM126417
| Sample_status | Public on Aug 11 2006
| Sample_submission_date | Aug 09 2006
| Sample_last_update_date | Aug 10 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | 10 mM Caffeine in media (treatment for 4 hours)
| Sample_treatment_protocol_ch1 | Wash 2X with PBS
| Sample_treatment_protocol_ch1 | 2ug/mL actinomycin D in media (treatment for 4 hours)
| Sample_treatment_protocol_ch1 | RNA extraction
| Sample_growth_protocol_ch1 | DMEM with 10% FBS and antibiotics
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIZOL protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | As per Affymetrix Protocol
| Sample_hyb_protocol | As per Affymetrix Protocol
| Sample_scan_protocol | As per Affymetrix Protocol
| Sample_data_processing | RAW
| Sample_platform_id | GPL570
| Sample_contact_name | Ken,,Lo
| Sample_contact_email | ken.lo@roswellpark.org
| Sample_contact_phone | 716-845-3941
| Sample_contact_fax | 716-845-3940
| Sample_contact_laboratory | John Cowell
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | Roswell Park Cancer Institute
| Sample_contact_address | Elm and Carlton Streets
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14263
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126417/suppl/GSM126417.CEL.gz
| Sample_series_id | GSE5486
| Sample_data_row_count | 54675
| |
|
GSM126418 | GPL570 |
|
LS180_Caff+Act/Caff
|
LS180 cell line treated with Caffeine and Actinomycin D/Caffeine
|
Morphology: Epithelial
Human Caucasian colon adenocarcinoma
|
None
|
Sample_geo_accession | GSM126418
| Sample_status | Public on Aug 11 2006
| Sample_submission_date | Aug 09 2006
| Sample_last_update_date | Aug 10 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | 10 mM Caffeine in media (treatment for 4 hours)
| Sample_treatment_protocol_ch1 | Wash 2X with PBS
| Sample_treatment_protocol_ch1 | 2ug/mL actinomycin D and 10mM Caffeine in media (treatment for 4 hours)
| Sample_treatment_protocol_ch1 | RNA extraction
| Sample_growth_protocol_ch1 | DMEM with 10% FBS and antibiotics
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIZOL protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | As per Affymetrix Protocol
| Sample_hyb_protocol | As per Affymetrix Protocol
| Sample_scan_protocol | As per Affymetrix Protocol
| Sample_data_processing | RAW
| Sample_platform_id | GPL570
| Sample_contact_name | Ken,,Lo
| Sample_contact_email | ken.lo@roswellpark.org
| Sample_contact_phone | 716-845-3941
| Sample_contact_fax | 716-845-3940
| Sample_contact_laboratory | John Cowell
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | Roswell Park Cancer Institute
| Sample_contact_address | Elm and Carlton Streets
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14263
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126418/suppl/GSM126418.CEL.gz
| Sample_series_id | GSE5486
| Sample_data_row_count | 54675
| |
|
GSM126419 | GPL570 |
|
LS180_Con
|
LS180 cell line untreated
|
Morphology: Epithelial
Human Caucasian colon adenocarcinoma
|
None
|
Sample_geo_accession | GSM126419
| Sample_status | Public on Aug 11 2006
| Sample_submission_date | Aug 09 2006
| Sample_last_update_date | Aug 10 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | no treatment
| Sample_growth_protocol_ch1 | DMEM with 10% FBS and antibiotics
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIZOL protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | As per Affymetrix Protocol
| Sample_hyb_protocol | As per Affymetrix Protocol
| Sample_scan_protocol | As per Affymetrix Protocol
| Sample_data_processing | RAW
| Sample_platform_id | GPL570
| Sample_contact_name | Ken,,Lo
| Sample_contact_email | ken.lo@roswellpark.org
| Sample_contact_phone | 716-845-3941
| Sample_contact_fax | 716-845-3940
| Sample_contact_laboratory | John Cowell
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | Roswell Park Cancer Institute
| Sample_contact_address | Elm and Carlton Streets
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14263
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126419/suppl/GSM126419.CEL.gz
| Sample_series_id | GSE5486
| Sample_data_row_count | 54675
| |
|
GSM126420 | GPL570 |
|
LS180_Em
|
LS180 cell line treated with emetine
|
Morphology: Epithelial
Human Caucasian colon adenocarcinoma
|
None
|
Sample_geo_accession | GSM126420
| Sample_status | Public on Aug 11 2006
| Sample_submission_date | Aug 09 2006
| Sample_last_update_date | Aug 10 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | 100ug/mL emetine in media (treatment for 8 hours)
| Sample_treatment_protocol_ch1 | wash 2X with PBS
| Sample_treatment_protocol_ch1 | RNA extraction
| Sample_growth_protocol_ch1 | DMEM with 10% FBS and antibiotics
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIZOL protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | As per Affymetrix Protocol
| Sample_hyb_protocol | As per Affymetrix Protocol
| Sample_scan_protocol | As per Affymetrix Protocol
| Sample_data_processing | RAW
| Sample_platform_id | GPL570
| Sample_contact_name | Ken,,Lo
| Sample_contact_email | ken.lo@roswellpark.org
| Sample_contact_phone | 716-845-3941
| Sample_contact_fax | 716-845-3940
| Sample_contact_laboratory | John Cowell
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | Roswell Park Cancer Institute
| Sample_contact_address | Elm and Carlton Streets
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14263
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126420/suppl/GSM126420.CEL.gz
| Sample_series_id | GSE5486
| Sample_data_row_count | 54675
| |
|
GSM126421 | GPL570 |
|
SW480_Caff+Act
|
SW480 cell line treated with Caffeine and Actinomycin D
|
Morphology: epithelial-like
Species: human; Tissue: colon; Tumor: adenocarcinoma
|
None
|
Sample_geo_accession | GSM126421
| Sample_status | Public on Aug 11 2006
| Sample_submission_date | Aug 09 2006
| Sample_last_update_date | Aug 10 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | 10 mM Caffeine in media (treatment for 4 hours)
| Sample_treatment_protocol_ch1 | Wash 2X with PBS
| Sample_treatment_protocol_ch1 | 2ug/mL actinomycin D in media (treatment for 4 hours)
| Sample_treatment_protocol_ch1 | RNA extraction
| Sample_growth_protocol_ch1 | DMEM with 10% FBS and antibiotics
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIZOL protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | As per Affymetrix Protocol
| Sample_hyb_protocol | As per Affymetrix Protocol
| Sample_scan_protocol | As per Affymetrix Protocol
| Sample_data_processing | RAW
| Sample_platform_id | GPL570
| Sample_contact_name | Ken,,Lo
| Sample_contact_email | ken.lo@roswellpark.org
| Sample_contact_phone | 716-845-3941
| Sample_contact_fax | 716-845-3940
| Sample_contact_laboratory | John Cowell
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | Roswell Park Cancer Institute
| Sample_contact_address | Elm and Carlton Streets
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14263
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126421/suppl/GSM126421.CEL.gz
| Sample_series_id | GSE5486
| Sample_data_row_count | 54675
| |
|
GSM126422 | GPL570 |
|
SW480_Caff+Act/Caff
|
SW480 cell line treated with Caffeine and Actinomycin D/Caffeine
|
Morphology: epithelial-like
Species: human; Tissue: colon; Tumor: adenocarcinoma
|
None
|
Sample_geo_accession | GSM126422
| Sample_status | Public on Aug 11 2006
| Sample_submission_date | Aug 09 2006
| Sample_last_update_date | Aug 10 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | 10 mM Caffeine in media (treatment for 4 hours)
| Sample_treatment_protocol_ch1 | Wash 2X with PBS
| Sample_treatment_protocol_ch1 | 2ug/mL actinomycin D and 10mM Caffeine in media (treatment for 4 hours)
| Sample_treatment_protocol_ch1 | RNA extraction
| Sample_growth_protocol_ch1 | DMEM with 10% FBS and antibiotics
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIZOL protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | As per Affymetrix Protocol
| Sample_hyb_protocol | As per Affymetrix Protocol
| Sample_scan_protocol | As per Affymetrix Protocol
| Sample_data_processing | RAW
| Sample_platform_id | GPL570
| Sample_contact_name | Ken,,Lo
| Sample_contact_email | ken.lo@roswellpark.org
| Sample_contact_phone | 716-845-3941
| Sample_contact_fax | 716-845-3940
| Sample_contact_laboratory | John Cowell
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | Roswell Park Cancer Institute
| Sample_contact_address | Elm and Carlton Streets
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14263
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126422/suppl/GSM126422.CEL.gz
| Sample_series_id | GSE5486
| Sample_data_row_count | 54675
| |
|
GSM126423 | GPL570 |
|
SW480_Con
|
SW480 cell line untreated
|
Morphology: epithelial-like
Species: human; Tissue: colon; Tumor: adenocarcinoma
|
None
|
Sample_geo_accession | GSM126423
| Sample_status | Public on Aug 11 2006
| Sample_submission_date | Aug 09 2006
| Sample_last_update_date | Aug 10 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | untreated
| Sample_growth_protocol_ch1 | DMEM with 10% FBS and antibiotics
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIZOL protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | As per Affymetrix Protocol
| Sample_hyb_protocol | As per Affymetrix Protocol
| Sample_scan_protocol | As per Affymetrix Protocol
| Sample_data_processing | RAW
| Sample_platform_id | GPL570
| Sample_contact_name | Ken,,Lo
| Sample_contact_email | ken.lo@roswellpark.org
| Sample_contact_phone | 716-845-3941
| Sample_contact_fax | 716-845-3940
| Sample_contact_laboratory | John Cowell
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | Roswell Park Cancer Institute
| Sample_contact_address | Elm and Carlton Streets
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14263
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126423/suppl/GSM126423.CEL.gz
| Sample_series_id | GSE5486
| Sample_data_row_count | 54675
| |
|
GSM126424 | GPL570 |
|
SW480_Em
|
SW480 cell line treated with emetine
|
Morphology: epithelial-like
Species: human; Tissue: colon; Tumor: adenocarcinoma
|
None
|
Sample_geo_accession | GSM126424
| Sample_status | Public on Aug 11 2006
| Sample_submission_date | Aug 09 2006
| Sample_last_update_date | Aug 10 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_biomaterial_provider_ch1 | ATCC
| Sample_treatment_protocol_ch1 | 100ug/mL emetine in media (treatment for 8 hours)
| Sample_treatment_protocol_ch1 | wash 2X with PBS
| Sample_treatment_protocol_ch1 | RNA extraction
| Sample_growth_protocol_ch1 | DMEM with 10% FBS and antibiotics
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRIZOL protocol
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | As per Affymetrix Protocol
| Sample_hyb_protocol | As per Affymetrix Protocol
| Sample_scan_protocol | As per Affymetrix Protocol
| Sample_data_processing | RAW
| Sample_platform_id | GPL570
| Sample_contact_name | Ken,,Lo
| Sample_contact_email | ken.lo@roswellpark.org
| Sample_contact_phone | 716-845-3941
| Sample_contact_fax | 716-845-3940
| Sample_contact_laboratory | John Cowell
| Sample_contact_department | Cancer Genetics
| Sample_contact_institute | Roswell Park Cancer Institute
| Sample_contact_address | Elm and Carlton Streets
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14263
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126424/suppl/GSM126424.CEL.gz
| Sample_series_id | GSE5486
| Sample_data_row_count | 54675
| |
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