Search results for the GEO ID: GSE5496  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM126578 | GPL339 |
|
liver_LDLr-KO, biological replicate 1
|
liver, LDLr-KO
|
Strain: C57BL/6
Gender:male
Tissue:liver
|
Gene expression data comparing ABCA1 over-expression in LDL receptor +/- genetic background
|
| Sample_geo_accession | GSM126578
| | Sample_status | Public on Aug 10 2006
| | Sample_submission_date | Aug 10 2006
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diet: NIH36, livers were snap-frozen and stored at -80C
| | Sample_growth_protocol_ch1 | Male mice were sacrificed at 5 to 6 months old
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, Qiagen RNEasy clean-up with on-column DNAse treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples prepared with Arcturus RiboAmp protocol from 2 ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix (HP) GeneArray Scanner G2500A.
| | Sample_data_processing | RMA-normalization
| | Sample_platform_id | GPL339
| | Sample_contact_name | Eric,,Billings
| | Sample_contact_institute | NHLBI
| | Sample_contact_address | 10 Center Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20874
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126578/suppl/GSM126578.CEL.gz
| | Sample_series_id | GSE5496
| | Sample_data_row_count | 22690
| | |
|
GSM126579 | GPL339 |
|
liver_LDLr-KO, biological replicate 2
|
liver, LDLr-KO
|
Strain: C57BL/6
Gender:male
Tissue:liver
|
Gene expression data comparing ABCA1 over-expression in LDL receptor +/- genetic background
|
| Sample_geo_accession | GSM126579
| | Sample_status | Public on Aug 10 2006
| | Sample_submission_date | Aug 10 2006
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diet: NIH36, livers were snap-frozen and stored at -80C
| | Sample_growth_protocol_ch1 | Male mice were sacrificed at 5 to 6 months old
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, Qiagen RNEasy clean-up with on-column DNAse treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples prepared with Arcturus RiboAmp protocol from 2 ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix (HP) GeneArray Scanner G2500A.
| | Sample_data_processing | RMA-normalization
| | Sample_platform_id | GPL339
| | Sample_contact_name | Eric,,Billings
| | Sample_contact_institute | NHLBI
| | Sample_contact_address | 10 Center Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20874
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126579/suppl/GSM126579.CEL.gz
| | Sample_series_id | GSE5496
| | Sample_data_row_count | 22690
| | |
|
GSM126580 | GPL339 |
|
liver_LDLr-KO, biological replicate 3
|
liver, LDLr-KO
|
Strain: C57BL/6
Gender:male
Tissue:liver
|
Gene expression data comparing ABCA1 over-expression in LDL receptor +/- genetic background
|
| Sample_geo_accession | GSM126580
| | Sample_status | Public on Aug 10 2006
| | Sample_submission_date | Aug 10 2006
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diet: NIH36, livers were snap-frozen and stored at -80C
| | Sample_growth_protocol_ch1 | Male mice were sacrificed at 5 to 6 months old
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, Qiagen RNEasy clean-up with on-column DNAse treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples prepared with Arcturus RiboAmp protocol from 2 ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix (HP) GeneArray Scanner G2500A.
| | Sample_data_processing | RMA-normalization
| | Sample_platform_id | GPL339
| | Sample_contact_name | Eric,,Billings
| | Sample_contact_institute | NHLBI
| | Sample_contact_address | 10 Center Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20874
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126580/suppl/GSM126580.CEL.gz
| | Sample_series_id | GSE5496
| | Sample_data_row_count | 22690
| | |
|
GSM126581 | GPL339 |
|
liver_ABCA1-TG, biological replicate 1
|
liver, ABCA1-TG
|
Strain: C57BL/6
Gender:male
Tissue:liver
|
Gene expression data comparing ABCA1 over-expression in LDL receptor +/- genetic background
|
| Sample_geo_accession | GSM126581
| | Sample_status | Public on Aug 10 2006
| | Sample_submission_date | Aug 10 2006
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diet: NIH36, livers were snap-frozen and stored at -80C
| | Sample_growth_protocol_ch1 | Male mice were sacrificed at 5 to 6 months old
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, Qiagen RNEasy clean-up with on-column DNAse treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples prepared with Arcturus RiboAmp protocol from 2 ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix (HP) GeneArray Scanner G2500A.
| | Sample_data_processing | RMA-normalization
| | Sample_platform_id | GPL339
| | Sample_contact_name | Eric,,Billings
| | Sample_contact_institute | NHLBI
| | Sample_contact_address | 10 Center Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20874
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126581/suppl/GSM126581.CEL.gz
| | Sample_series_id | GSE5496
| | Sample_data_row_count | 22690
| | |
|
GSM126582 | GPL339 |
|
liver_ABCA1-TG, biological replicate 2
|
liver, ABCA1-TG
|
Strain: C57BL/6
Gender:male
Tissue:liver
|
Gene expression data comparing ABCA1 over-expression in LDL receptor +/- genetic background
|
| Sample_geo_accession | GSM126582
| | Sample_status | Public on Aug 10 2006
| | Sample_submission_date | Aug 10 2006
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diet: NIH36, livers were snap-frozen and stored at -80C
| | Sample_growth_protocol_ch1 | Male mice were sacrificed at 5 to 6 months old
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, Qiagen RNEasy clean-up with on-column DNAse treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples prepared with Arcturus RiboAmp protocol from 2 ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix (HP) GeneArray Scanner G2500A.
| | Sample_data_processing | RMA-normalization
| | Sample_platform_id | GPL339
| | Sample_contact_name | Eric,,Billings
| | Sample_contact_institute | NHLBI
| | Sample_contact_address | 10 Center Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20874
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126582/suppl/GSM126582.CEL.gz
| | Sample_series_id | GSE5496
| | Sample_data_row_count | 22690
| | |
|
GSM126583 | GPL339 |
|
liver_ABCA1-TG, biological replicate 3
|
liver, ABCA1-TG
|
Strain: C57BL/6
Gender:male
Tissue:liver
|
Gene expression data comparing ABCA1 over-expression in LDL receptor +/- genetic background
|
| Sample_geo_accession | GSM126583
| | Sample_status | Public on Aug 10 2006
| | Sample_submission_date | Aug 10 2006
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diet: NIH36, livers were snap-frozen and stored at -80C
| | Sample_growth_protocol_ch1 | Male mice were sacrificed at 5 to 6 months old
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, Qiagen RNEasy clean-up with on-column DNAse treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples prepared with Arcturus RiboAmp protocol from 2 ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix (HP) GeneArray Scanner G2500A.
| | Sample_data_processing | RMA-normalization
| | Sample_platform_id | GPL339
| | Sample_contact_name | Eric,,Billings
| | Sample_contact_institute | NHLBI
| | Sample_contact_address | 10 Center Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20874
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126583/suppl/GSM126583.CEL.gz
| | Sample_series_id | GSE5496
| | Sample_data_row_count | 22690
| | |
|
GSM126584 | GPL339 |
|
liver_LDLr-KO, biological replicate 4
|
liver, LDLr-KO
|
Strain: C57BL/6
Gender:male
Tissue:liver
|
Gene expression data comparing ABCA1 over-expression in LDL receptor +/- genetic background
|
| Sample_geo_accession | GSM126584
| | Sample_status | Public on Aug 10 2006
| | Sample_submission_date | Aug 10 2006
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diet: NIH36, livers were snap-frozen and stored at -80C
| | Sample_growth_protocol_ch1 | Male mice were sacrificed at 5 to 6 months old
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, Qiagen RNEasy clean-up with on-column DNAse treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples prepared with Arcturus RiboAmp protocol from 2 ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix (HP) GeneArray Scanner G2500A.
| | Sample_data_processing | RMA-normalization
| | Sample_platform_id | GPL339
| | Sample_contact_name | Eric,,Billings
| | Sample_contact_institute | NHLBI
| | Sample_contact_address | 10 Center Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20874
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126584/suppl/GSM126584.CEL.gz
| | Sample_series_id | GSE5496
| | Sample_data_row_count | 22690
| | |
|
GSM126585 | GPL339 |
|
liver_ABCA1-TG, biological replicate 4
|
liver, ABCA1-TG
|
Strain: C57BL/6
Gender:male
Tissue:liver
|
Gene expression data comparing ABCA1 over-expression in LDL receptor +/- genetic background
|
| Sample_geo_accession | GSM126585
| | Sample_status | Public on Aug 10 2006
| | Sample_submission_date | Aug 10 2006
| | Sample_last_update_date | Mar 27 2007
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Diet: NIH36, livers were snap-frozen and stored at -80C
| | Sample_growth_protocol_ch1 | Male mice were sacrificed at 5 to 6 months old
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction, Qiagen RNEasy clean-up with on-column DNAse treatment
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples prepared with Arcturus RiboAmp protocol from 2 ug of total RNA
| | Sample_hyb_protocol | Following fragmentation, 12 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix (HP) GeneArray Scanner G2500A.
| | Sample_data_processing | RMA-normalization
| | Sample_platform_id | GPL339
| | Sample_contact_name | Eric,,Billings
| | Sample_contact_institute | NHLBI
| | Sample_contact_address | 10 Center Drive
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20874
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM126nnn/GSM126585/suppl/GSM126585.CEL.gz
| | Sample_series_id | GSE5496
| | Sample_data_row_count | 22690
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