Search results for the GEO ID: GSE5579  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM130277 | GPL570 |
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Lymphatic endothelial in normoxia
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Dermal microvascular cells, commercially available
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RNA Pooled from 6 different individuals
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- Normalization: Employing GCOS software, chips were normalized using all probe sets scaling option and target signal at 500.
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| Sample_geo_accession | GSM130277
| | Sample_status | Public on Aug 23 2007
| | Sample_submission_date | Aug 23 2006
| | Sample_last_update_date | Aug 23 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CAMBREX
| | Sample_treatment_protocol_ch1 | Normoxia 20 Oxigen % 24 h
| | Sample_growth_protocol_ch1 | BEM w/o bFGF and VEGF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and mini RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | IVT labeling kit from affymetrix
| | Sample_hyb_protocol | Hybridization: According to the manufacturer's protocol (Affymetrix).
| | Sample_scan_protocol | Scanner: GeneChip Scanner 3000.
| | Sample_data_processing | Microarray suite 5.0, Tiling Array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ana,,Rouzaut
| | Sample_contact_email | arouzaut@unav.es
| | Sample_contact_phone | 34 948194700
| | Sample_contact_fax | 34 948194714
| | Sample_contact_laboratory | 1.03
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/CIMA
| | Sample_contact_address | Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM130nnn/GSM130277/suppl/GSM130277.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM130nnn/GSM130277/suppl/GSM130277.EXP.gz
| | Sample_series_id | GSE5579
| | Sample_data_row_count | 54675
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GSM130278 | GPL570 |
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Lymphatic endothelial cells upon hypoxia
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Dermal microvascular cells, commercially available
|
RNA Pooled from 6 different individuals
|
- Normalization: Employing GCOS software, chips were normalized using all probe sets scaling option and target signal at 500.
|
| Sample_geo_accession | GSM130278
| | Sample_status | Public on Aug 23 2007
| | Sample_submission_date | Aug 23 2006
| | Sample_last_update_date | Aug 23 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CAMBREX
| | Sample_treatment_protocol_ch1 | Hipoxia 1% 24 h
| | Sample_growth_protocol_ch1 | BEM w/o bFGF and VEGF
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and mini RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | IVT labeling kit from affymetrix
| | Sample_hyb_protocol | Hybridization: According to the manufacturer's protocol (Affymetrix).
| | Sample_scan_protocol | Scanner: GeneChip Scanner 3000.
| | Sample_data_processing | Microarray suite 5.0, Tiling Array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ana,,Rouzaut
| | Sample_contact_email | arouzaut@unav.es
| | Sample_contact_phone | 34 948194700
| | Sample_contact_fax | 34 948194714
| | Sample_contact_laboratory | 1.03
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/CIMA
| | Sample_contact_address | Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM130nnn/GSM130278/suppl/GSM130278.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM130nnn/GSM130278/suppl/GSM130278.EXP.gz
| | Sample_series_id | GSE5579
| | Sample_data_row_count | 54675
| | |
|
GSM130280 | GPL570 |
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Lymphatic endothelial cells upon conditioned medium from NSCLC 24 h
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Dermal microvascular cells, commercially available
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RNA Pooled from 6 different individuals
|
- Normalization: Employing GCOS software, chips were normalized using all probe sets scaling option and target signal at 500.
|
| Sample_geo_accession | GSM130280
| | Sample_status | Public on Aug 23 2007
| | Sample_submission_date | Aug 23 2006
| | Sample_last_update_date | Aug 23 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CAMBREX
| | Sample_treatment_protocol_ch1 | Conditioned medium from lung carcinoma cells growth under 20% oxigen, 24 h
| | Sample_growth_protocol_ch1 | BEM w/o bFGF and VEGF supplemented with concentrated supernatants from growth media derived from lung adenocarcinoma cells grown under normoxia
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and mini RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | IVT labeling kit from affymetrix
| | Sample_hyb_protocol | Hybridization: According to the manufacturer's protocol (Affymetrix).
| | Sample_scan_protocol | Scanner: GeneChip Scanner 3000.
| | Sample_data_processing | Microarray suite 5.0, Tiling Array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ana,,Rouzaut
| | Sample_contact_email | arouzaut@unav.es
| | Sample_contact_phone | 34 948194700
| | Sample_contact_fax | 34 948194714
| | Sample_contact_laboratory | 1.03
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/CIMA
| | Sample_contact_address | Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM130nnn/GSM130280/suppl/GSM130280.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM130nnn/GSM130280/suppl/GSM130280.EXP.gz
| | Sample_series_id | GSE5579
| | Sample_data_row_count | 54675
| | |
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GSM130281 | GPL570 |
|
Lymphatic endothelial cells upon conditioned medium from NSCLC hypoxia 24 h
|
Dermal microvascular cells, commercially available
|
RNA Pooled from 6 different individuals
|
- Normalization: Employing GCOS software, chips were normalized using all probe sets scaling option and target signal at 500.
|
| Sample_geo_accession | GSM130281
| | Sample_status | Public on Aug 23 2007
| | Sample_submission_date | Aug 23 2006
| | Sample_last_update_date | Aug 23 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CAMBREX
| | Sample_treatment_protocol_ch1 | Conditioned medium from lung carcinoma cells growth under 1% oxigen, 24 h
| | Sample_growth_protocol_ch1 | BEM w/o bFGF and VEGF supplemented with concentrated supernatants from growth media derived from lung adenocarcinoma cells grown under hypoxia for 24 h
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and mini RNeasy kit (Qiagen)
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | IVT labeling kit from affymetrix
| | Sample_hyb_protocol | Hybridization: According to the manufacturer's protocol (Affymetrix).
| | Sample_scan_protocol | Scanner: GeneChip Scanner 3000.
| | Sample_data_processing | Microarray suite 5.0, Tiling Array
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ana,,Rouzaut
| | Sample_contact_email | arouzaut@unav.es
| | Sample_contact_phone | 34 948194700
| | Sample_contact_fax | 34 948194714
| | Sample_contact_laboratory | 1.03
| | Sample_contact_department | Oncology
| | Sample_contact_institute | University of Navarra/CIMA
| | Sample_contact_address | Pio XII 55
| | Sample_contact_city | Pamplona
| | Sample_contact_state | Navarra
| | Sample_contact_zip/postal_code | 31008
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM130nnn/GSM130281/suppl/GSM130281.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM130nnn/GSM130281/suppl/GSM130281.EXP.gz
| | Sample_series_id | GSE5579
| | Sample_data_row_count | 54675
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