Search results for the GEO ID: GSE5716  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM132964 | GPL570 |
|
ALLSIL DMSO control 24h rep1
|
ALL-SIL human T-cell lymphoblastic cell line vehicle only(DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM132964
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | T-cell acute lymphoblastic leukemia cell line kindly provided by Dr. A Thomas Look at Dana-Farber Cancer Institute, Boston, Massachusetts, US.
| | Sample_treatment_protocol_ch1 | Vehicle control (DMSO) treatment for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM132nnn/GSM132964/suppl/GSM132964_CONTROL_ALLSIL_DMSO24-1.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166279
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM132965 | GPL570 |
|
ALLSIL DMSO control 24h rep2
|
ALL-SIL human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM132965
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | T-cell acute lymphoblastic leukemia cell line kindly provided by Dr. A Thomas Look at Dana-Farber Cancer Institute, Boston, Massachusetts, US.
| | Sample_treatment_protocol_ch1 | Vehicle control (DMSO) treatment for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM132nnn/GSM132965/suppl/GSM132965_CONTROL_ALLSIL_DMSO24-2.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166280
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM132966 | GPL570 |
|
CCRF-CEM DMSO control 24h rep1
|
CCRF-CEM human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM132966
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | Vehicle control (DMSO) treatment for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM132nnn/GSM132966/suppl/GSM132966_CONTROL_CCRF-CEM_DMSO_24hs_1.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166281
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM132988 | GPL570 |
|
CCRF-CEM DMSO control 24h rep2
|
CCRF-CEM human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM132988
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM132nnn/GSM132988/suppl/GSM132988_CONTROL_CCRF-CEM_DMSO_24hs_2.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166282
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM132991 | GPL570 |
|
CUTLL1 DMSO control 24h rep1
|
CUTLL1 human T-cell lymphoblastic cell line gamma-secretase inhibitor (CompE 500nM) treatment 24h
|
T-cell acute lymphoblastic lymphoma cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM132991
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Ferrando Lab, Columbia University, New York
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with Trizol reagent (Invitrogen) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM132nnn/GSM132991/suppl/GSM132991_CONTROL_CUTLL1DMSO24hs1.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166285
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM132994 | GPL570 |
|
CUTLL1 DMSO control 24h rep2
|
CUTLL1 human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic lymphoma cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM132994
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Ferrando Lab, Columbia University, New York
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM132nnn/GSM132994/suppl/GSM132994_CONTROL_CUTLL1DMSO24hs2.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166286
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM133004 | GPL570 |
|
DND41 DMSO control 24h rep1
|
DND41 human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM133004
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | T-cell acute lymphoblastic leukemia cell line kindly provided by Dr. A Thomas Look at Dana-Farber Cancer Institute, Boston, Massachusetts, US.
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM133nnn/GSM133004/suppl/GSM133004_CONTROL_DND41_CTRL_3.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166287
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM133006 | GPL570 |
|
DND41 DMSO control 24h rep2
|
DND41 human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM133006
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | T-cell acute lymphoblastic leukemia cell line kindly provided by Dr. A Thomas Look at Dana-Farber Cancer Institute, Boston, Massachusetts, US.
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM133nnn/GSM133006/suppl/GSM133006_CONTROL_DND41_CTRL2.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166288
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM133007 | GPL570 |
|
HPB-ALL DMSO control 24h rep2
|
HPB-ALL human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM133007
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | T-cell acute lymphoblastic leukemia cell line kindly provided by Dr. A Thomas Look at Dana-Farber Cancer Institute, Boston, Massachusetts, US.
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM133nnn/GSM133007/suppl/GSM133007_CONTROL_HPBALL_DMSO24-2.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166290
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM133010 | GPL570 |
|
KOPTK1 DMSO control 24h rep1
|
KOPTK1
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM133010
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | T-cell acute lymphoblastic leukemia cell line kindly provided by Dr. A Thomas Look at Dana-Farber Cancer Institute, Boston, Massachusetts, US.
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM133nnn/GSM133010/suppl/GSM133010_CONTROL_KOPTK1_DMSO24-2.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166291
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM133011 | GPL570 |
|
KOPTK1 DMSO control 24h rep2
|
KOPTK1 human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM133011
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | T-cell acute lymphoblastic leukemia cell line kindly provided by Dr. A Thomas Look at Dana-Farber Cancer Institute, Boston, Massachusetts, US.
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM133nnn/GSM133011/suppl/GSM133011_CONTROL_KOPTK1_DMSO24-3.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166292
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM133020 | GPL570 |
|
RPMI8402 DMSO control 24h rep1
|
RPMI8402 human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM133020
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM133nnn/GSM133020/suppl/GSM133020_CONTROL_RPMI8402_DMSO24hs1.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166293
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM133021 | GPL570 |
|
RPMI8402 DMSO control 24h rep2
|
RPMI8402 human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM133021
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | ATCC
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM133nnn/GSM133021/suppl/GSM133021_CONTROL_RPMI8402_DMSO24hs2.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166294
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
|
GSM133023 | GPL570 |
|
HPB-ALL DMSO control 24h rep1
|
HPB-ALL human T-cell lymphoblastic cell line vehicle only (DMSO) treatment control 24h
|
T-cell acute lymphoblastic leukemia cell line
|
Standard Affymetrix procedure
|
| Sample_geo_accession | GSM133023
| | Sample_status | Public on Apr 22 2008
| | Sample_submission_date | Aug 31 2006
| | Sample_last_update_date | Jun 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | T-cell acute lymphoblastic leukemia cell line kindly provided by Dr. A Thomas Look at Dana-Farber Cancer Institute, Boston, Massachusetts, US.
| | Sample_treatment_protocol_ch1 | Vehicle treatment (DMSO) control for 24 h.
| | Sample_growth_protocol_ch1 | Cells were cultured in RPMI1640 media supplemented with 10% fetal bovine serum plus antibiotics (pen/strep) in a humidified incubator with 5% CO2 atmosphere at 37C
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was extracted with RNAqueous minikit (Ambion) following the manufacturer’s instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approx. 10 micrograms of total RNA was processed to produce biotinylated cRNA targets
| | Sample_hyb_protocol | Standard Affymetrix procedure
| | Sample_scan_protocol | Standard Affymetrix procedure
| | Sample_data_processing | Affymetrix Microarray Suite Version 5 followed by Dchip data normalization for adjustment of interarray intensity differences and calculation of model based expression (VALUE).
| | Sample_platform_id | GPL570
| | Sample_contact_name | Adolfo,A,Ferrando
| | Sample_contact_email | af2196@columbia.edu
| | Sample_contact_phone | 212-851-4611
| | Sample_contact_department | Institute for Cancer Genetics
| | Sample_contact_institute | Columbia University
| | Sample_contact_address | 1130 St Nicholas Ave Irving Cancer Research Center 5-505A
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10032
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM133nnn/GSM133023/suppl/GSM133023_CONTROL_HPBALL_DMSO24-1.CEL.gz
| | Sample_relation | Reanalyzed by: GSM1166289
| | Sample_series_id | GSE5682
| | Sample_series_id | GSE5716
| | Sample_series_id | GSE5827
| | Sample_data_row_count | 54675
| | |
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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