Search results for the GEO ID: GSE5789 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM133955 | GPL85 |
|
Rat liver control_13 week_rep1
|
Rat liver_vehicle control_13 week_rep1
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: corn oil:acetone (99:1; vehicle control)
Rat IDs: 89 & 95
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM133955
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 01 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM133nnn/GSM133955/suppl/GSM133955.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134952 | GPL85 |
|
Rat liver control_13 week_rep2
|
Rat liver_vehicle control_13 week_rep2
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: corn oil:acetone (99:1; vehicle control)
Rat IDs: 1101 & 1102
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134952
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134952/suppl/GSM134952.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134954 | GPL85 |
|
Rat liver control_13 week_rep3
|
Rat liver_vehicle control_13 week_rep3
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: corn oil:acetone (99:1; vehicle control)
Rat IDs: 1103 & 1104
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134954
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134954/suppl/GSM134954.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134955 | GPL85 |
|
Rat liver control_13 week_rep4
|
Rat liver_vehicle control_13 week_rep4
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: corn oil:acetone (99:1; vehicle control)
Rat IDs: 1105 & 1106
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134955
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134955/suppl/GSM134955.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134956 | GPL85 |
|
Rat liver control_13 week_rep5
|
Rat liver_vehicle control_13 week_rep5
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: corn oil:acetone (99:1; vehicle control)
Rat IDs:32 & 50
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134956
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134956/suppl/GSM134956.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134957 | GPL85 |
|
Rat liver control_13 week_rep6
|
Rat liver_vehicle control_13 week_rep6
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: corn oil:acetone (99:1; vehicle control)
Rat IDs: 59 & 60
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134957
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134957/suppl/GSM134957.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134958 | GPL85 |
|
Rat liver TCDD_13 week_rep1
|
Rat liver_TCDD_13 week_rep1
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 100ng/kg/day TCDD
Rat IDs: 639 & 645
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134958
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134958/suppl/GSM134958.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134959 | GPL85 |
|
Rat liver TCDD_13 week_rep2
|
Rat liver_TCDD_13 week_rep2
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 100ng/kg/day TCDD
Rat IDs: 582 & 605
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134959
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134959/suppl/GSM134959.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134960 | GPL85 |
|
Rat liver TCDD_13 week_rep3
|
Rat liver_TCDD_13 week_rep3
|
Female Sprague Dawley Rats
Tissue: Liver
Treatment: 100ng/kg/day TCDD
Rat IDs: 607 & 610
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134960
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134960/suppl/GSM134960.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134961 | GPL85 |
|
Rat liver_PeCDF_13 week_rep1
|
Rat liver_PeCDF_13 week_rep1
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 200ng/kg/day PeCDF
Rat IDs: 588 & 591
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134961
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134961/suppl/GSM134961.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134962 | GPL85 |
|
Rat liver_PeCDF_13 week_rep2
|
Rat liver_PeCDF_13 week_rep2
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 200ng/kg/day PeCDF
Rat IDs: 503 & 508
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134962
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134962/suppl/GSM134962.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134963 | GPL85 |
|
Rat liver_PeCDF_13 week_rep3
|
Rat liver_PeCDF_13 week_rep3
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 200ng/kg/day PeCDF
Rat IDs: 520 & 528
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134963
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134963/suppl/GSM134963.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134964 | GPL85 |
|
Rat liver_PCB126_13 week_rep1
|
Rat liver_PCB126_13 week_rep1
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 1000ng/kg/day PCB126
Rat IDs: 1175 & 1176
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134964
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134964/suppl/GSM134964.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134965 | GPL85 |
|
Rat liver_PCB126_13 week_rep2
|
Rat liver_PCB126_13 week_rep2
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 1000ng/kg/day PCB126
Rat IDs: 1171 & 1172
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134965
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134965/suppl/GSM134965.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134966 | GPL85 |
|
Rat liver_PCB126_13 week_rep3
|
Rat liver_PCB126_13 week_rep3
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 1000ng/kg/day PCB126
Rat IDs: 1173 & 1174
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134966
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134966/suppl/GSM134966.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134967 | GPL85 |
|
Rat liver_Binary_13 week_rep1
|
Rat liver_Binary_13 week_rep1
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 1000ng/kg/day PCB126 & 1000ug/kg/day PCB153
Rat IDs: 697 & 665
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134967
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134967/suppl/GSM134967.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134968 | GPL85 |
|
Rat liver_Binary_13 week_rep2
|
Rat liver_Binary_13 week_rep2
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 1000ng/kg/day PCB126 & 1000ug/kg/day PCB153
Rat IDs: 636 & 634
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134968
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134968/suppl/GSM134968.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134969 | GPL85 |
|
Rat liver_Binary_13 week_rep3
|
Rat liver_Binary_13 week_rep3
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 1000ng/kg/day PCB126 & 1000ug/kg/day PCB153
Rat IDs: 644 & 697
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134969
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134969/suppl/GSM134969.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134970 | GPL85 |
|
Rat liver_PCB153_13 week_rep1
|
Rat liver_PCB153_13 week_rep1
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 1000ug/kg/day PCB153
Rat IDs: 494 & 496
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134970
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 07 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134970/suppl/GSM134970.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134971 | GPL85 |
|
Rat liver_PCB153_13 week_rep2
|
Rat liver_PCB153_13 week_rep2
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 1000ug/kg/day PCB153
Rat IDs: 418 & 445
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134971
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134971/suppl/GSM134971.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
GSM134972 | GPL85 |
|
Rat liver_PCB153_13 week_rep3
|
Rat liver_PCB153_13 week_rep3
|
Organism: Female Sprague Dawley Rats
Tissue: Liver
Treatment: 1000ug/kg/day PCB153
Rat IDs: 473 & 492
|
Tissues were obtained from a 2-year cancer bioassay investigating the relative carcinogenic potencies of the AhR ligands 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), 2,3,4,7,8-pentachlorodibenzofuran (PeCDF) and 3,3´,4,4´,5-pentachlorobiphenyl (PCB126); the non-AhR ligand 2,2´,4,4´,5,5´-hexachlorobiphenyl (PCB153) and the binary mixture of PCBs 126 and 153. Female Harlan Sprague-Dawley rats were exposed for 13 weeks, 5 days a week via oral gavage to toxic equivalent doses of TCDD, PeCDF, PCB126, PCB153, the binary mixture of PCBs 126 and 153 or a vehicle control of corn oil:acetone (99:1).
|
Sample_geo_accession | GSM134972
| Sample_status | Public on Sep 08 2006
| Sample_submission_date | Sep 06 2006
| Sample_last_update_date | Sep 15 2006
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Rattus norvegicus
| Sample_taxid_ch1 | 10116
| Sample_biomaterial_provider_ch1 | National Toxicology Program
| Sample_treatment_protocol_ch1 | Treatment regimen: 13 weeks, 5 days/week, oral gavage
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Qiagen RNeasy Kit with Dnase treatment
| Sample_label_ch1 | biotin
| Sample_data_processing | Gene traffic by Iobion using GCRMA method
| Sample_platform_id | GPL85
| Sample_contact_name | Bladimir,Jason,Ovando
| Sample_contact_email | bovando@buffalo.edu
| Sample_contact_phone | 716-829-3066
| Sample_contact_laboratory | James R. Olson
| Sample_contact_department | Pharmacology & Toxicology
| Sample_contact_institute | University at Buffalo
| Sample_contact_address | 102 Farber Hall
| Sample_contact_city | Buffalo
| Sample_contact_state | NY
| Sample_contact_zip/postal_code | 14214
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM134nnn/GSM134972/suppl/GSM134972.CEL.gz
| Sample_series_id | GSE5789
| Sample_data_row_count | 8799
| |
|
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Select GSMs and click on "Add groups" |
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