Search results for the GEO ID: GSE5868  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM136777 | GPL570 |
|
Clements control sample
|
Clements_control-sample
|
Tissue: tumour tissue
Extraction Protocol: Tumour tissue derived by passaging primary subcutaneous SV7tertAML-derived tumour into nude mice.
|
control
|
| Sample_geo_accession | GSM136777
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2006
| | Sample_last_update_date | Sep 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | biotin
| | Sample_data_processing | The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,R.,Johnson
| | Sample_contact_email | simon.johnson@nottingham.ac.uk
| | Sample_contact_department | Therapeutics and Molecular Medicine
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Queen's Medical Centre
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM136nnn/GSM136777/suppl/GSM136777.CEL.gz
| | Sample_series_id | GSE5868
| | Sample_data_row_count | 54675
| | |
|
GSM136778 | GPL570 |
|
Clements oestrogen-treated sample
|
oestrogen
|
Tissue: tumour tissue
Extraction Protocol: Tumour tissue derived by passaging primary subcutaneous SV7tertAML-derived tumour into nude mice.
|
estrogen treatment
|
| Sample_geo_accession | GSM136778
| | Sample_status | Public on Sep 19 2007
| | Sample_submission_date | Sep 19 2006
| | Sample_last_update_date | Sep 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | 0.36mg 60 day release oestrogen pellets implanted sub-cutaneously into mouse host
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | biotin
| | Sample_data_processing | The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
| | Sample_platform_id | GPL570
| | Sample_contact_name | Simon,R.,Johnson
| | Sample_contact_email | simon.johnson@nottingham.ac.uk
| | Sample_contact_department | Therapeutics and Molecular Medicine
| | Sample_contact_institute | University of Nottingham
| | Sample_contact_address | Queen's Medical Centre
| | Sample_contact_city | Nottingham
| | Sample_contact_zip/postal_code | NG7 2UH
| | Sample_contact_country | United Kingdom
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM136nnn/GSM136778/suppl/GSM136778.CEL.gz
| | Sample_series_id | GSE5868
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
Select expression type |
| Transcripts profile based on; |
A. Differential status (Up/Down regulation) |
|
|
Regulation type |
|
Fold change |
|
p-value |
|
|
|
B. Absolute calls (Transcribed/Not-detected) |
|
|
| Derive calls within/across groups |
Within groups |
|
|
Detection status |
|
Percentage detection |
|
|
Across groups |
|
|
Detection status |
First group: |
- |
Second group:
|
Percentage detection |
First group: |
- |
Second group:
|
|
|
| |
Filter results by number of probes |
|
|
