Search results for the GEO ID: GSE5967  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM138597 | GPL96 |
|
patient with rejection r1
|
whole peripheral blood RNA; heart transplant rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with acute cellular rejection
|
| Sample_geo_accession | GSM138597
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138597/suppl/GSM138597.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138598 | GPL96 |
|
patient with rejection r2
|
whole peripheral blood RNA; heart transplant rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with acute cellular rejection
|
| Sample_geo_accession | GSM138598
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138598/suppl/GSM138598.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138599 | GPL96 |
|
patient with rejection r3
|
whole peripheral blood RNA; heart transplant rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with acute cellular rejection
|
| Sample_geo_accession | GSM138599
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138599/suppl/GSM138599.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138600 | GPL96 |
|
patient with rejection r4
|
whole peripheral blood RNA; heart transplant rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with acute cellular rejection
|
| Sample_geo_accession | GSM138600
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138600/suppl/GSM138600.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138601 | GPL96 |
|
patient with rejection r5
|
whole peripheral blood RNA; heart transplant rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with acute cellular rejection
|
| Sample_geo_accession | GSM138601
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138601/suppl/GSM138601.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138602 | GPL96 |
|
patient with rejection r6
|
whole peripheral blood RNA; heart transplant rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with acute cellular rejection
|
| Sample_geo_accession | GSM138602
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138602/suppl/GSM138602.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138603 | GPL96 |
|
patient with rejection r7
|
whole peripheral blood RNA; heart transplant rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with acute cellular rejection
|
| Sample_geo_accession | GSM138603
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138603/suppl/GSM138603.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138604 | GPL96 |
|
follow-up sample after treatment of rejection post1
|
whole peripheral blood RNA; heart transplant post-rejection (paired with r1)
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients after treatment and resolution of rejection
|
| Sample_geo_accession | GSM138604
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138604/suppl/GSM138604.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138605 | GPL96 |
|
follow-up sample after treatment of rejection post2
|
whole peripheral blood RNA; heart transplant post-rejection (paired with r2)
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients after treatment and resolution of rejection
|
| Sample_geo_accession | GSM138605
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138605/suppl/GSM138605.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138606 | GPL96 |
|
follow-up sample after treatment of rejection post3
|
whole peripheral blood RNA; heart transplant post-rejection (paired with r3)
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients after treatment and resolution of rejection
|
| Sample_geo_accession | GSM138606
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138606/suppl/GSM138606.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138607 | GPL96 |
|
follow-up sample after treatment of rejection post4
|
whole peripheral blood RNA; heart transplant post-rejection (paired with r4)
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients after treatment and resolution of rejection
|
| Sample_geo_accession | GSM138607
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138607/suppl/GSM138607.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138608 | GPL96 |
|
follow-up sample after treatment of rejection post5
|
whole peripheral blood RNA; heart transplant post-rejection (paired with r5)
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients after treatment and resolution of rejection
|
| Sample_geo_accession | GSM138608
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138608/suppl/GSM138608.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138609 | GPL96 |
|
follow-up sample after treatment of rejection post6
|
whole peripheral blood RNA; heart transplant post-rejection (paired with r6)
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients after treatment and resolution of rejection
|
| Sample_geo_accession | GSM138609
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138609/suppl/GSM138609.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138610 | GPL96 |
|
follow-up sample after treatment of rejection post7
|
whole peripheral blood RNA; heart transplant post-rejection (paired with r7)
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients after treatment and resolution of rejection
|
| Sample_geo_accession | GSM138610
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138610/suppl/GSM138610.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138611 | GPL96 |
|
control with no rejection con1
|
whole peripheral blood RNA; heart transplant no rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with no rejection
|
| Sample_geo_accession | GSM138611
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138611/suppl/GSM138611.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138612 | GPL96 |
|
control with no rejection con2
|
whole peripheral blood RNA; heart transplant no rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with no rejection
|
| Sample_geo_accession | GSM138612
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138612/suppl/GSM138612.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138613 | GPL96 |
|
control with no rejection con3
|
whole peripheral blood RNA; heart transplant no rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with no rejection
|
| Sample_geo_accession | GSM138613
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138613/suppl/GSM138613.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138614 | GPL96 |
|
control with no rejection con4
|
whole peripheral blood RNA; heart transplant no rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with no rejection
|
| Sample_geo_accession | GSM138614
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138614/suppl/GSM138614.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138615 | GPL96 |
|
control with no rejection con5
|
whole peripheral blood RNA; heart transplant no rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with no rejection
|
| Sample_geo_accession | GSM138615
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138615/suppl/GSM138615.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138616 | GPL96 |
|
control with no rejection con6
|
whole peripheral blood RNA; heart transplant no rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with no rejection
|
| Sample_geo_accession | GSM138616
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138616/suppl/GSM138616.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
GSM138617 | GPL96 |
|
control with no rejection con7
|
whole peripheral blood RNA; heart transplant no rejection
|
whole peripheral blood RNA
|
Gene expression data from whole periheral blood in heart transplant recipients with no rejection
|
| Sample_geo_accession | GSM138617
| | Sample_status | Public on Oct 04 2006
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Oct 04 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | PaxGene preserved RNA
| | Sample_growth_protocol_ch1 | none
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol
| | Sample_hyb_protocol | Following fragmentation cRNA were hybridized with HU133A arrays according to Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data were normalized using Robust Multi-Array Analysis (RMA). www.bioconductor.org
| | Sample_platform_id | GPL96
| | Sample_contact_name | Thomas,,Cappola
| | Sample_contact_email | thomas.cappola@uphs.upenn.edu
| | Sample_contact_department | Penn Cardiovascular Institute
| | Sample_contact_institute | Univeristy of Pennsylvania School of Medicine
| | Sample_contact_address | 6 Penn Tower, 3400 Spruce Street
| | Sample_contact_city | Philadelphia
| | Sample_contact_state | PA
| | Sample_contact_zip/postal_code | 19104
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138617/suppl/GSM138617.cel.gz
| | Sample_series_id | GSE5967
| | Sample_data_row_count | 22283
| | |
|
| |
| |
Make groups for comparisons |
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| Select GSMs and click on "Add groups" |
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