Search results for the GEO ID: GSE5993  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM139217 | GPL570 |
|
control_B1, empty vector
|
Cervical carcinoma
|
Age: 66 yrs Gender: Female Ethnicity: Caucasian
|
None
|
| Sample_geo_accession | GSM139217
| | Sample_status | Public on Dec 01 2006
| | Sample_submission_date | Oct 08 2006
| | Sample_last_update_date | Oct 30 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Peter Howley, Harvard Medical School, Boston, MA
| | Sample_treatment_protocol_ch1 | Cells were transduced with lentiviral supernatant containing pLL p63shRNA or empty vector (control), and harvested ~65 hours later.
| | Sample_growth_protocol_ch1 | Cells were grown in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% Fetal Bovine Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen), per manufacturer’s instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was converted to cDNA using T7-oligo(dT) and in vitro transcribed to obtain biotin-labeled cRNA for hybridization.
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to the Affymetrix HG-U133 plus 2.0 GeneChip, washed, and stained according to manufacturer’s instructions.
| | Sample_data_processing | Data were processed by Affymetrix GeneChip Operating Software (GCOS), followed by global median normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kevin,,Struhl
| | Sample_contact_laboratory | Struhl lab
| | Sample_contact_department | Dept. Of Biological Chemistry & Molecular Pharmacology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM139nnn/GSM139217/suppl/GSM139217.CEL.gz
| | Sample_series_id | GSE5993
| | Sample_data_row_count | 54675
| | |
|
GSM139218 | GPL570 |
|
control_B2, empty vector
|
Cervical carcinoma
|
Age: 66 yrs Gender: Female Ethnicity: Caucasian
|
None
|
| Sample_geo_accession | GSM139218
| | Sample_status | Public on Dec 01 2006
| | Sample_submission_date | Oct 08 2006
| | Sample_last_update_date | Oct 30 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Peter Howley, Harvard Medical School, Boston, MA
| | Sample_treatment_protocol_ch1 | Cells were transduced with lentiviral supernatant containing pLL p63shRNA or empty vector (control), and harvested ~65 hours later.
| | Sample_growth_protocol_ch1 | Cells were grown in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% Fetal Bovine Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen), per manufacturer’s instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was converted to cDNA using T7-oligo(dT) and in vitro transcribed to obtain biotin-labeled cRNA for hybridization.
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to the Affymetrix HG-U133 plus 2.0 GeneChip, washed, and stained according to manufacturer’s instructions.
| | Sample_data_processing | Data were processed by Affymetrix GeneChip Operating Software (GCOS), followed by global median normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kevin,,Struhl
| | Sample_contact_laboratory | Struhl lab
| | Sample_contact_department | Dept. Of Biological Chemistry & Molecular Pharmacology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM139nnn/GSM139218/suppl/GSM139218.CEL.gz
| | Sample_series_id | GSE5993
| | Sample_data_row_count | 54675
| | |
|
GSM139219 | GPL570 |
|
control_B3, empty vector
|
Cervical carcinoma
|
Age: 66 yrs Gender: Female Ethnicity: Caucasian
|
None
|
| Sample_geo_accession | GSM139219
| | Sample_status | Public on Dec 01 2006
| | Sample_submission_date | Oct 08 2006
| | Sample_last_update_date | Oct 30 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Peter Howley, Harvard Medical School, Boston, MA
| | Sample_treatment_protocol_ch1 | Cells were transduced with lentiviral supernatant containing pLL p63shRNA or empty vector (control), and harvested ~65 hours later.
| | Sample_growth_protocol_ch1 | Cells were grown in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% Fetal Bovine Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen), per manufacturer’s instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was converted to cDNA using T7-oligo(dT) and in vitro transcribed to obtain biotin-labeled cRNA for hybridization.
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to the Affymetrix HG-U133 plus 2.0 GeneChip, washed, and stained according to manufacturer’s instructions.
| | Sample_data_processing | Data were processed by Affymetrix GeneChip Operating Software (GCOS), followed by global median normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kevin,,Struhl
| | Sample_contact_laboratory | Struhl lab
| | Sample_contact_department | Dept. Of Biological Chemistry & Molecular Pharmacology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM139nnn/GSM139219/suppl/GSM139219.CEL.gz
| | Sample_series_id | GSE5993
| | Sample_data_row_count | 54675
| | |
|
GSM139220 | GPL570 |
|
p63shRNA_B1, p63-depleted
|
Cervical carcinoma
|
Age: 66 yrs Gender: Female Ethnicity: Caucasian
|
None
|
| Sample_geo_accession | GSM139220
| | Sample_status | Public on Dec 01 2006
| | Sample_submission_date | Oct 08 2006
| | Sample_last_update_date | Oct 30 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Peter Howley, Harvard Medical School, Boston, MA
| | Sample_treatment_protocol_ch1 | Cells were transduced with lentiviral supernatant containing pLL p63shRNA or empty vector (control), and harvested ~65 hours later.
| | Sample_growth_protocol_ch1 | Cells were grown in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% Fetal Bovine Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen), per manufacturer’s instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was converted to cDNA using T7-oligo(dT) and in vitro transcribed to obtain biotin-labeled cRNA for hybridization.
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to the Affymetrix HG-U133 plus 2.0 GeneChip, washed, and stained according to manufacturer’s instructions.
| | Sample_data_processing | Data were processed by Affymetrix GeneChip Operating Software (GCOS), followed by global median normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kevin,,Struhl
| | Sample_contact_laboratory | Struhl lab
| | Sample_contact_department | Dept. Of Biological Chemistry & Molecular Pharmacology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM139nnn/GSM139220/suppl/GSM139220.CEL.gz
| | Sample_series_id | GSE5993
| | Sample_data_row_count | 54675
| | |
|
GSM139221 | GPL570 |
|
p63shRNA_B2, p63-depleted
|
Cervical carcinoma
|
Age: 66 yrs Gender: Female Ethnicity: Caucasian
|
None
|
| Sample_geo_accession | GSM139221
| | Sample_status | Public on Dec 01 2006
| | Sample_submission_date | Oct 08 2006
| | Sample_last_update_date | Oct 30 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Peter Howley, Harvard Medical School, Boston, MA
| | Sample_treatment_protocol_ch1 | Cells were transduced with lentiviral supernatant containing pLL p63shRNA or empty vector (control), and harvested ~65 hours later.
| | Sample_growth_protocol_ch1 | Cells were grown in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% Fetal Bovine Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen), per manufacturer’s instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was converted to cDNA using T7-oligo(dT) and in vitro transcribed to obtain biotin-labeled cRNA for hybridization.
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to the Affymetrix HG-U133 plus 2.0 GeneChip, washed, and stained according to manufacturer’s instructions.
| | Sample_data_processing | Data were processed by Affymetrix GeneChip Operating Software (GCOS), followed by global median normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kevin,,Struhl
| | Sample_contact_laboratory | Struhl lab
| | Sample_contact_department | Dept. Of Biological Chemistry & Molecular Pharmacology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM139nnn/GSM139221/suppl/GSM139221.CEL.gz
| | Sample_series_id | GSE5993
| | Sample_data_row_count | 54675
| | |
|
GSM139222 | GPL570 |
|
p63shRNA_B3, p63-depleted
|
Cervical carcinoma
|
Age: 66 yrs Gender: Female Ethnicity: Caucasian
|
None
|
| Sample_geo_accession | GSM139222
| | Sample_status | Public on Dec 01 2006
| | Sample_submission_date | Oct 08 2006
| | Sample_last_update_date | Oct 30 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | Peter Howley, Harvard Medical School, Boston, MA
| | Sample_treatment_protocol_ch1 | Cells were transduced with lentiviral supernatant containing pLL p63shRNA or empty vector (control), and harvested ~65 hours later.
| | Sample_growth_protocol_ch1 | Cells were grown in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% Fetal Bovine Serum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol (Invitrogen), per manufacturer’s instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Total RNA was converted to cDNA using T7-oligo(dT) and in vitro transcribed to obtain biotin-labeled cRNA for hybridization.
| | Sample_hyb_protocol | Biotinylated cRNA was hybridized to the Affymetrix HG-U133 plus 2.0 GeneChip, washed, and stained according to manufacturer’s instructions.
| | Sample_data_processing | Data were processed by Affymetrix GeneChip Operating Software (GCOS), followed by global median normalization.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kevin,,Struhl
| | Sample_contact_laboratory | Struhl lab
| | Sample_contact_department | Dept. Of Biological Chemistry & Molecular Pharmacology
| | Sample_contact_institute | Harvard Medical School
| | Sample_contact_address | 240 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM139nnn/GSM139222/suppl/GSM139222.CEL.gz
| | Sample_series_id | GSE5993
| | Sample_data_row_count | 54675
| | |
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