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Search results for the GEO ID: GSE6045

(Click on the check boxes provided under "Select for analysis", to initiate grouping)

(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down)

GSM ID

GPL ID

Select for analysis

Title

Source name

Description

Characteristics

GSM140222

GPL339

Cochlea DBA2J 7 weeks 1

RNA

Strain: DBA/2J mice Gender: male Age: 7-week-old Tissue: cochlea

Sample_geo_accession	GSM140222
Sample_status	Public on Oct 16 2007
Sample_submission_date	Oct 16 2006
Sample_last_update_date	Oct 17 2006
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_biomaterial_provider_ch1	JAX
Sample_treatment_protocol_ch1 = To identify genes associated with AHL, each 7-week-old sample (n = 3) was compared to each 36-week-old sample (n	3), generating a total of nine pairwise comparisons.
Sample_growth_protocol_ch1	All mice were raised under 12:12 dark/light conditions, and housed in the the University of Tokyo-approved Animal Care Facility, and were provided a nonpurified diet and acidified water ad libitum.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from cochlea tissues using the TriZol reagent (Invitrogen) according to the manufacture’s instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	cDNA synthesis from total RNA (Invitrogen), cRNA amplification and labeling (Enzo BioArray IVT kit) were accomplished according to the manufacture’s instructions (Affymetrix).
Sample_hyb_protocol	Hybridization (Affymetrix Hybridization oven 640), washing, and staining (Affymetrix Fluidics station 400) were accomplished according to the manufacture’s instructions.
Sample_scan_protocol	Arrays were scanned on the Affymetrix GeneChip Scanner 3000. Image analysis was performed using the Affymetrix software.
Sample_data_processing	Scaled to 1500 (Affymetrix software)
Sample_platform_id	GPL339
Sample_contact_name	Shinichi,,Someya
Sample_contact_email	someya@wisc.edu
Sample_contact_phone	608-265-5205
Sample_contact_fax	608-262-2976
Sample_contact_laboratory	Prolla Lab
Sample_contact_department	Medical Genetics
Sample_contact_institute	University of Wisconsin-Madison
Sample_contact_address	425 Henry Mall Dr
Sample_contact_city	Madison
Sample_contact_state	WI
Sample_contact_zip/postal_code	53706
Sample_contact_country	USA
Sample_contact_web_link	http://www.genetics.wisc.edu/faculty/profile.php?id=140
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140222/suppl/GSM140222.cel.gz
Sample_series_id	GSE6045
Sample_data_row_count	22626

GSM140223

GPL339

Cochlea DBA2J 7 weeks 2

RNA

Strain: DBA/2J mice Gender: male Age: 7-week-old Tissue: cochlea

Sample_geo_accession	GSM140223
Sample_status	Public on Oct 16 2007
Sample_submission_date	Oct 16 2006
Sample_last_update_date	Oct 17 2006
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_biomaterial_provider_ch1	JAX
Sample_treatment_protocol_ch1 = To identify genes associated with AHL, each 7-week-old sample (n = 3) was compared to each 36-week-old sample (n	3), generating a total of nine pairwise comparisons.
Sample_growth_protocol_ch1	All mice were raised under 12:12 dark/light conditions, and housed in the the University of Tokyo-approved Animal Care Facility, and were provided a nonpurified diet and acidified water ad libitum.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from cochlea tissues using the TriZol reagent (Invitrogen) according to the manufacture’s instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	cDNA synthesis from total RNA (Invitrogen), cRNA amplification and labeling (Enzo BioArray IVT kit) were accomplished according to the manufacture’s instructions (Affymetrix).
Sample_hyb_protocol	Hybridization (Affymetrix Hybridization oven 640), washing, and staining (Affymetrix Fluidics station 400) were accomplished according to the manufacture’s instructions.
Sample_scan_protocol	Arrays were scanned on the Affymetrix GeneChip Scanner 3000. Image analysis was performed using the Affymetrix software.
Sample_data_processing	Scaled to 1500 (Affymetrix software)
Sample_platform_id	GPL339
Sample_contact_name	Shinichi,,Someya
Sample_contact_email	someya@wisc.edu
Sample_contact_phone	608-265-5205
Sample_contact_fax	608-262-2976
Sample_contact_laboratory	Prolla Lab
Sample_contact_department	Medical Genetics
Sample_contact_institute	University of Wisconsin-Madison
Sample_contact_address	425 Henry Mall Dr
Sample_contact_city	Madison
Sample_contact_state	WI
Sample_contact_zip/postal_code	53706
Sample_contact_country	USA
Sample_contact_web_link	http://www.genetics.wisc.edu/faculty/profile.php?id=140
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140223/suppl/GSM140223.cel.gz
Sample_series_id	GSE6045
Sample_data_row_count	22626

GSM140224

GPL339

Cochlea DBA2J 7 weeks 3

RNA

Strain: DBA/2J mice Gender: male Age: 7-week-old Tissue: cochlea

Sample_geo_accession	GSM140224
Sample_status	Public on Oct 16 2007
Sample_submission_date	Oct 16 2006
Sample_last_update_date	Oct 17 2006
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_biomaterial_provider_ch1	JAX
Sample_treatment_protocol_ch1 = To identify genes associated with AHL, each 7-week-old sample (n = 3) was compared to each 36-week-old sample (n	3), generating a total of nine pairwise comparisons.
Sample_growth_protocol_ch1	All mice were raised under 12:12 dark/light conditions, and housed in the the University of Tokyo-approved Animal Care Facility, and were provided a nonpurified diet and acidified water ad libitum.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from cochlea tissues using the TriZol reagent (Invitrogen) according to the manufacture’s instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	cDNA synthesis from total RNA (Invitrogen), cRNA amplification and labeling (Enzo BioArray IVT kit) were accomplished according to the manufacture’s instructions (Affymetrix).
Sample_hyb_protocol	Hybridization (Affymetrix Hybridization oven 640), washing, and staining (Affymetrix Fluidics station 400) were accomplished according to the manufacture’s instructions.
Sample_scan_protocol	Arrays were scanned on the Affymetrix GeneChip Scanner 3000. Image analysis was performed using the Affymetrix software.
Sample_data_processing	Scaled to 1500 (Affymetrix software)
Sample_platform_id	GPL339
Sample_contact_name	Shinichi,,Someya
Sample_contact_email	someya@wisc.edu
Sample_contact_phone	608-265-5205
Sample_contact_fax	608-262-2976
Sample_contact_laboratory	Prolla Lab
Sample_contact_department	Medical Genetics
Sample_contact_institute	University of Wisconsin-Madison
Sample_contact_address	425 Henry Mall Dr
Sample_contact_city	Madison
Sample_contact_state	WI
Sample_contact_zip/postal_code	53706
Sample_contact_country	USA
Sample_contact_web_link	http://www.genetics.wisc.edu/faculty/profile.php?id=140
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140224/suppl/GSM140224.cel.gz
Sample_series_id	GSE6045
Sample_data_row_count	22626

GSM140225

GPL339

Cochlea DBA2J 36 weeks 1

RNA

Strain: DBA/2J mice Gender: male Age: 36-week-old Tissue: cochlea

Sample_geo_accession	GSM140225
Sample_status	Public on Oct 16 2007
Sample_submission_date	Oct 16 2006
Sample_last_update_date	Oct 17 2006
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_biomaterial_provider_ch1	JAX
Sample_treatment_protocol_ch1 = To identify genes associated with AHL, each 7-week-old sample (n = 3) was compared to each 36-week-old sample (n	3), generating a total of nine pairwise comparisons.
Sample_growth_protocol_ch1	All mice were raised under 12:12 dark/light conditions, and housed in the the University of Tokyo-approved Animal Care Facility, and were provided a nonpurified diet and acidified water ad libitum.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from cochlea tissues using the TriZol reagent (Invitrogen) according to the manufacture’s instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	cDNA synthesis from total RNA (Invitrogen), cRNA amplification and labeling (Enzo BioArray IVT kit) were accomplished according to the manufacture’s instructions (Affymetrix).
Sample_hyb_protocol	Hybridization (Affymetrix Hybridization oven 640), washing, and staining (Affymetrix Fluidics station 400) were accomplished according to the manufacture’s instructions.
Sample_scan_protocol	Arrays were scanned on the Affymetrix GeneChip Scanner 3000. Image analysis was performed using the Affymetrix software.
Sample_data_processing	Scaled to 1500 (Affymetrix software)
Sample_platform_id	GPL339
Sample_contact_name	Shinichi,,Someya
Sample_contact_email	someya@wisc.edu
Sample_contact_phone	608-265-5205
Sample_contact_fax	608-262-2976
Sample_contact_laboratory	Prolla Lab
Sample_contact_department	Medical Genetics
Sample_contact_institute	University of Wisconsin-Madison
Sample_contact_address	425 Henry Mall Dr
Sample_contact_city	Madison
Sample_contact_state	WI
Sample_contact_zip/postal_code	53706
Sample_contact_country	USA
Sample_contact_web_link	http://www.genetics.wisc.edu/faculty/profile.php?id=140
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140225/suppl/GSM140225.cel.gz
Sample_series_id	GSE6045
Sample_data_row_count	22626

GSM140226

GPL339

Cochlea DBA2J 36 weeks 2

RNA

Strain: DBA/2J mice Gender: male Age: 36-week-old Tissue: cochlea

Sample_geo_accession	GSM140226
Sample_status	Public on Oct 16 2007
Sample_submission_date	Oct 16 2006
Sample_last_update_date	Oct 17 2006
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_biomaterial_provider_ch1	JAX
Sample_treatment_protocol_ch1 = To identify genes associated with AHL, each 7-week-old sample (n = 3) was compared to each 36-week-old sample (n	3), generating a total of nine pairwise comparisons.
Sample_growth_protocol_ch1	All mice were raised under 12:12 dark/light conditions, and housed in the the University of Tokyo-approved Animal Care Facility, and were provided a nonpurified diet and acidified water ad libitum.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from cochlea tissues using the TriZol reagent (Invitrogen) according to the manufacture’s instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	cDNA synthesis from total RNA (Invitrogen), cRNA amplification and labeling (Enzo BioArray IVT kit) were accomplished according to the manufacture’s instructions (Affymetrix).
Sample_hyb_protocol	Hybridization (Affymetrix Hybridization oven 640), washing, and staining (Affymetrix Fluidics station 400) were accomplished according to the manufacture’s instructions.
Sample_scan_protocol	Arrays were scanned on the Affymetrix GeneChip Scanner 3000. Image analysis was performed using the Affymetrix software.
Sample_data_processing	Scaled to 1500 (Affymetrix software)
Sample_platform_id	GPL339
Sample_contact_name	Shinichi,,Someya
Sample_contact_email	someya@wisc.edu
Sample_contact_phone	608-265-5205
Sample_contact_fax	608-262-2976
Sample_contact_laboratory	Prolla Lab
Sample_contact_department	Medical Genetics
Sample_contact_institute	University of Wisconsin-Madison
Sample_contact_address	425 Henry Mall Dr
Sample_contact_city	Madison
Sample_contact_state	WI
Sample_contact_zip/postal_code	53706
Sample_contact_country	USA
Sample_contact_web_link	http://www.genetics.wisc.edu/faculty/profile.php?id=140
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140226/suppl/GSM140226.cel.gz
Sample_series_id	GSE6045
Sample_data_row_count	22626

GSM140227

GPL339

Cochlea DBA2J 36 weeks 3

RNA

Strain: DBA/2J mice Gender: male Age: 36-week-old Tissue: cochlea

Sample_geo_accession	GSM140227
Sample_status	Public on Oct 16 2007
Sample_submission_date	Oct 16 2006
Sample_last_update_date	Oct 17 2006
Sample_type	RNA
Sample_channel_count	1
Sample_organism_ch1	Mus musculus
Sample_taxid_ch1	10090
Sample_biomaterial_provider_ch1	JAX
Sample_treatment_protocol_ch1 = To identify genes associated with AHL, each 7-week-old sample (n = 3) was compared to each 36-week-old sample (n	3), generating a total of nine pairwise comparisons.
Sample_growth_protocol_ch1	All mice were raised under 12:12 dark/light conditions, and housed in the the University of Tokyo-approved Animal Care Facility, and were provided a nonpurified diet and acidified water ad libitum.
Sample_molecule_ch1	total RNA
Sample_extract_protocol_ch1	Total RNA was isolated from cochlea tissues using the TriZol reagent (Invitrogen) according to the manufacture’s instructions.
Sample_label_ch1	Biotin
Sample_label_protocol_ch1	cDNA synthesis from total RNA (Invitrogen), cRNA amplification and labeling (Enzo BioArray IVT kit) were accomplished according to the manufacture’s instructions (Affymetrix).
Sample_hyb_protocol	Hybridization (Affymetrix Hybridization oven 640), washing, and staining (Affymetrix Fluidics station 400) were accomplished according to the manufacture’s instructions.
Sample_scan_protocol	Arrays were scanned on the Affymetrix GeneChip Scanner 3000. Image analysis was performed using the Affymetrix software.
Sample_data_processing	Scaled to 1500 (Affymetrix software)
Sample_platform_id	GPL339
Sample_contact_name	Shinichi,,Someya
Sample_contact_email	someya@wisc.edu
Sample_contact_phone	608-265-5205
Sample_contact_fax	608-262-2976
Sample_contact_laboratory	Prolla Lab
Sample_contact_department	Medical Genetics
Sample_contact_institute	University of Wisconsin-Madison
Sample_contact_address	425 Henry Mall Dr
Sample_contact_city	Madison
Sample_contact_state	WI
Sample_contact_zip/postal_code	53706
Sample_contact_country	USA
Sample_contact_web_link	http://www.genetics.wisc.edu/faculty/profile.php?id=140
Sample_supplementary_file	ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140227/suppl/GSM140227.cel.gz
Sample_series_id	GSE6045
Sample_data_row_count	22626

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