Search results for the GEO ID: GSE6054 |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM140232 | GPL570 |
|
heterozygot FH P249
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: heterozygote FH
|
Gene expression data from the heterozygous FH participant V
|
Sample_geo_accession | GSM140232
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140232/suppl/GSM140232.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140233 | GPL570 |
|
homozygot FH P251
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: homozygote FH
|
Gene expression data from the homozygous FH participant K1
|
Sample_geo_accession | GSM140233
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140233/suppl/GSM140233.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140234 | GPL570 |
|
homozygot FH P253
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: homozygote FH
|
Gene expression data from the homozygous FH participant K2
|
Sample_geo_accession | GSM140234
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140234/suppl/GSM140234.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140235 | GPL570 |
|
homozygot FH P262
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: homozygote FH
|
Gene expression data from the homozygous FH participant A
|
Sample_geo_accession | GSM140235
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140235/suppl/GSM140235.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140236 | GPL570 |
|
heterozygot FH P266
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: heterozygote FH
|
Gene expression data from the heterozygous FH participant B
|
Sample_geo_accession | GSM140236
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140236/suppl/GSM140236.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140237 | GPL570 |
|
homozygot FH P270wh
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: homozygote FH
|
Gene expression data from the homozygous FH participant C
|
Sample_geo_accession | GSM140237
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140237/suppl/GSM140237.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140239 | GPL570 |
|
heterozygot FH P279
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: heterozygote FH
|
Gene expression data from the heterozygous FH participant F
|
Sample_geo_accession | GSM140239
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140239/suppl/GSM140239.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140240 | GPL570 |
|
heterozygot FH P282
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: heterozygote FH
|
Gene expression data from the heterozygous FH participant M
|
Sample_geo_accession | GSM140240
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140240/suppl/GSM140240.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140241 | GPL570 |
|
heterozygot FH P560
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: heterozygote FH
|
Gene expression data from the heterozygous FH participant DW
|
Sample_geo_accession | GSM140241
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140241/suppl/GSM140241.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140244 | GPL570 |
|
control participant P303
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant BL
|
Sample_geo_accession | GSM140244
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140244/suppl/GSM140244.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140245 | GPL570 |
|
control participant P307
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant KP
|
Sample_geo_accession | GSM140245
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140245/suppl/GSM140245.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140246 | GPL570 |
|
control participant P309
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant DB
|
Sample_geo_accession | GSM140246
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140246/suppl/GSM140246.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140247 | GPL570 |
|
control participant P311
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant LF
|
Sample_geo_accession | GSM140247
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140247/suppl/GSM140247.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140248 | GPL570 |
|
control participant P313
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant SH
|
Sample_geo_accession | GSM140248
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140248/suppl/GSM140248.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140249 | GPL570 |
|
control participant P317
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant MO
|
Sample_geo_accession | GSM140249
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Aug 15 2013
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140249/suppl/GSM140249.CEL.gz
| Sample_relation | Reanalyzed by: GSE49910
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140250 | GPL570 |
|
control participant P319
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant TL
|
Sample_geo_accession | GSM140250
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140250/suppl/GSM140250.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140251 | GPL570 |
|
control participant P327
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant T1
|
Sample_geo_accession | GSM140251
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140251/suppl/GSM140251.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140252 | GPL570 |
|
control participant P329
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant T2
|
Sample_geo_accession | GSM140252
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140252/suppl/GSM140252.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140253 | GPL570 |
|
control participant P331
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant T3
|
Sample_geo_accession | GSM140253
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140253/suppl/GSM140253.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140254 | GPL570 |
|
control participant P333
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant T4
|
Sample_geo_accession | GSM140254
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140254/suppl/GSM140254.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140255 | GPL570 |
|
control participant P335
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant T5
|
Sample_geo_accession | GSM140255
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140255/suppl/GSM140255.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140256 | GPL570 |
|
control participant P351
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: control participant
|
Gene expression data from control participant RF
|
Sample_geo_accession | GSM140256
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140256/suppl/GSM140256.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
|
GSM140257 | GPL570 |
|
heterozygot FH P387neu
|
human CD14 positive monopcytes
|
cell type: monocyte
disease state: heterozygote FH
|
Gene expression data from the heterozygous FH participant LW
|
Sample_geo_accession | GSM140257
| Sample_status | Public on Apr 01 2008
| Sample_submission_date | Oct 16 2006
| Sample_last_update_date | Apr 16 2010
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | monocytes were precipitated untouched from 8ml peripheral blood mononuclear cells, washed in PBS + 2mM EDTA, lysed in TriZol
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | the RNA was worked up using PLG Tubes and the Qiagen Rneasy Kit
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG U133A2.0 GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000
| Sample_data_processing | The data were analyzed with GCOS 1.4 using Affymetrix default analysis settings and global scaling as normalization method.
| Sample_platform_id | GPL570
| Sample_contact_name | Sandy,,Mosig
| Sample_contact_email | sandy.mosig@mti.uni-jena.de, sandy.mosig@googlemail.com
| Sample_contact_phone | +49-3641-934813
| Sample_contact_fax | +49-3641-933950
| Sample_contact_department | Molecular Hemostaseology - Institute of Vascular Medicine
| Sample_contact_institute | University Hospital Jena
| Sample_contact_address | Bachstrasse 18
| Sample_contact_city | Jena
| Sample_contact_zip/postal_code | 07743
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM140nnn/GSM140257/suppl/GSM140257.CEL.gz
| Sample_series_id | GSE6054
| Sample_data_row_count | 54675
| |
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Make groups for comparisons |
(2 groups will be compared at a time) |
|
Select GSMs and click on "Add groups" |
Enter the group name here: |
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