Search results for the GEO ID: GSE6205  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM143331 | GPL96 |
|
KMS28
|
Human multiple myeloma cell line (HMCL) KMS28
|
HMCL derived from multiple myeloma primary tumor. KMS28 shows t(4;14) translocation
|
Gene expression profiling data from human myeloma cell line KMS28
|
| Sample_geo_accession | GSM143331
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143331/suppl/GSM143331.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143332 | GPL96 |
|
KMS34
|
Human multiple myeloma cell line (HMCL) KMS34
|
HMCL derived from multiple myeloma primary tumor. KMS34 shows t(4;14) translocation
|
Gene expression profiling data from human myeloma cell line KMS34
|
| Sample_geo_accession | GSM143332
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143332/suppl/GSM143332.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143333 | GPL96 |
|
NCI-H929
|
Human multiple myeloma cell line (HMCL) NCI-H929
|
HMCL derived from multiple myeloma primary tumor. NCI-H929 shows t(4;14) translocation
|
Gene expression profiling data from human myeloma cell line NCI-H929
|
| Sample_geo_accession | GSM143333
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143333/suppl/GSM143333.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143334 | GPL96 |
|
KMS18
|
Human multiple myeloma cell line (HMCL) KMS18
|
HMCL derived from multiple myeloma primary tumor. KMS18 shows t(4;14) translocation
|
Gene expression profiling data from human myeloma cell line KMS18
|
| Sample_geo_accession | GSM143334
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143334/suppl/GSM143334.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143335 | GPL96 |
|
LP1
|
Human multiple myeloma cell line (HMCL) LP1
|
HMCL derived from multiple myeloma primary tumor. LP1 shows t(4;14) translocation
|
Gene expression profiling data from human myeloma cell line LP1
|
| Sample_geo_accession | GSM143335
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143335/suppl/GSM143335.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143336 | GPL96 |
|
OPM2
|
Human multiple myeloma cell line (HMCL) OPM2
|
HMCL derived from multiple myeloma primary tumor. OPM2 shows t(4;14) and t(20;unknown) translocations
|
Gene expression profiling data from human myeloma cell line OPM2
|
| Sample_geo_accession | GSM143336
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143336/suppl/GSM143336.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143337 | GPL96 |
|
KMS11
|
Human multiple myeloma cell line (HMCL) KMS11
|
HMCL derived from multiple myeloma primary tumor. KMS11 shows t(4;14) and t(14;16) translocations
|
Gene expression profiling data from human myeloma cell line KMS11
|
| Sample_geo_accession | GSM143337
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143337/suppl/GSM143337.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143338 | GPL96 |
|
KMS26
|
Human multiple myeloma cell line (HMCL) KMS26
|
HMCL derived from multiple myeloma primary tumor. KMS26 shows t(4;14) and t(16;unknown) translocations
|
Gene expression profiling data from human myeloma cell line KMS26
|
| Sample_geo_accession | GSM143338
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143338/suppl/GSM143338.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143339 | GPL96 |
|
JJN3
|
Human multiple myeloma cell line (HMCL) JJN3
|
HMCL derived from multiple myeloma primary tumor. JJN3 shows t(14;16) translocation
|
Gene expression profiling data from human myeloma cell line JJN3
|
| Sample_geo_accession | GSM143339
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143339/suppl/GSM143339.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143340 | GPL96 |
|
RPMI8226
|
Human multiple myeloma cell line (HMCL) RPMI8226
|
HMCL derived from multiple myeloma primary tumor. RPMI-8226 shows t(16;unknown) translocation
|
Gene expression profiling data from human myeloma cell line RPMI8226
|
| Sample_geo_accession | GSM143340
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143340/suppl/GSM143340.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143341 | GPL96 |
|
KM4
|
Human multiple myeloma cell line (HMCL) KM4
|
HMCL derived from multiple myeloma primary tumor. KM4 shows t(14;16) translocation
|
Gene expression profiling data from human myeloma cell line KM4
|
| Sample_geo_accession | GSM143341
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143341/suppl/GSM143341.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143342 | GPL96 |
|
CMA-02
|
Human multiple myeloma cell line (HMCL) CMA-02
|
HMCL derived from multiple myeloma primary tumor. CMA-02 shows t(14;16) translocation
|
Gene expression profiling data from human myeloma cell line CMA-02
|
| Sample_geo_accession | GSM143342
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS and 20 U/mL recombinant human IL-6 (R&D System, Minneapolis, MN, USA)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143342/suppl/GSM143342.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143343 | GPL96 |
|
SKMM1
|
Human multiple myeloma cell line (HMCL) SKMM1
|
HMCL derived from multiple myeloma primary tumor. SKMM1 shows t(14;20) translocation
|
Gene expression profiling data from human myeloma cell line SKMM1
|
| Sample_geo_accession | GSM143343
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143343/suppl/GSM143343.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143344 | GPL96 |
|
CMA-03
|
Human multiple myeloma cell line (HMCL) CMA-03
|
HMCL derived from multiple myeloma primary tumor. CMA-03 shows t(20;unknown) translocation
|
Gene expression profiling data from human myeloma cell line CMA-03
|
| Sample_geo_accession | GSM143344
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS and 20 U/mL recombinant human IL-6 (R&D System, Minneapolis, MN, USA)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143344/suppl/GSM143344.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143345 | GPL96 |
|
U266
|
Human multiple myeloma cell line (HMCL) U266
|
HMCL derived from multiple myeloma primary tumor. U266 shows t(11;14) translocation
|
Gene expression profiling data from human myeloma cell line U266
|
| Sample_geo_accession | GSM143345
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143345/suppl/GSM143345.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143346 | GPL96 |
|
KMS12
|
Human multiple myeloma cell line (HMCL) KMS12
|
HMCL derived from multiple myeloma primary tumor. KMS12 shows t(11;14) translocation
|
Gene expression profiling data from human myeloma cell line KMS12
|
| Sample_geo_accession | GSM143346
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143346/suppl/GSM143346.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143347 | GPL96 |
|
KMS27
|
Human multiple myeloma cell line (HMCL) KMS27
|
HMCL derived from multiple myeloma primary tumor. KMS27 shows t(11;14) translocation
|
Gene expression profiling data from human myeloma cell line KMS27
|
| Sample_geo_accession | GSM143347
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143347/suppl/GSM143347.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143348 | GPL96 |
|
CMA-01
|
Human multiple myeloma cell line (HMCL) CMA-01
|
HMCL derived from multiple myeloma primary tumor. CMA-01 shows t(11;14) translocation
|
Gene expression profiling data from human myeloma cell line CMA-01
|
| Sample_geo_accession | GSM143348
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS and 20 U/mL recombinant human IL-6 (R&D System, Minneapolis, MN, USA)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143348/suppl/GSM143348.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143349 | GPL96 |
|
KMM1
|
Human multiple myeloma cell line (HMCL) KMM1
|
HMCL derived from multiple myeloma primary tumor. KMM1 shows t(6;14) translocation
|
Gene expression profiling data from human myeloma cell line KMM1
|
| Sample_geo_accession | GSM143349
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143349/suppl/GSM143349.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143350 | GPL96 |
|
KMS20
|
Human multiple myeloma cell line (HMCL) KMS20
|
HMCL derived from multiple myeloma primary tumor.
|
Gene expression profiling data from human myeloma cell line KMS20
|
| Sample_geo_accession | GSM143350
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143350/suppl/GSM143350.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143351 | GPL96 |
|
NCU-MM1
|
Human multiple myeloma cell line (HMCL) NCU-MM1
|
HMCL derived from multiple myeloma primary tumor.
|
Gene expression profiling data from human myeloma cell line NCU-MM1
|
| Sample_geo_accession | GSM143351
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143351/suppl/GSM143351.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
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GSM143352 | GPL96 |
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FR4
|
Human multiple myeloma cell line (HMCL) FR4
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HMCL derived from multiple myeloma primary tumor.
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Gene expression profiling data from human myeloma cell line FR4
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| Sample_geo_accession | GSM143352
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143352/suppl/GSM143352.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
|
GSM143353 | GPL96 |
|
AMO-1
|
Human multiple myeloma cell line (HMCL) AMO-1
|
HMCL derived from multiple myeloma primary tumor.
|
Gene expression profiling data from human myeloma cell line AMO-1
|
| Sample_geo_accession | GSM143353
| | Sample_status | Public on Dec 28 2006
| | Sample_submission_date | Nov 01 2006
| | Sample_last_update_date | Apr 24 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Iscove's modified Dulbecco’s medium supplemented with 10% FCS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
| | Sample_data_processing | The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
| | Sample_platform_id | GPL96
| | Sample_contact_name | Antonino,,Neri
| | Sample_contact_email | emagene@policlinico.mi.it
| | Sample_contact_phone | +390255033328
| | Sample_contact_department | Department of Clinical Science and Community Health - Hematology 1
| | Sample_contact_institute | University of Milan - Fondazione IRCCS Ospedale Maggiore Policlinico
| | Sample_contact_address | Francesco Sforza, 35
| | Sample_contact_city | MILAN
| | Sample_contact_zip/postal_code | 20122
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143353/suppl/GSM143353.CEL.gz
| | Sample_series_id | GSE6205
| | Sample_data_row_count | 22283
| | |
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