Search results for the GEO ID: GSE6222  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM138595 | GPL570 |
|
HNL-1 (normal liver)
|
human liver
|
human liver
|
Tissue
|
| Sample_geo_accession | GSM138595
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Jul 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138595/suppl/GSM138595.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM138596 | GPL570 |
|
HNL-2 (normal human liver)
|
human liver
|
human
|
Tissue
|
| Sample_geo_accession | GSM138596
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Jul 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138596/suppl/GSM138596.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM138620 | GPL570 |
|
Huh7
|
HCC cell line
|
human
|
HCC cell line
|
| Sample_geo_accession | GSM138620
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Oct 04 2006
| | Sample_last_update_date | Jul 11 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM138nnn/GSM138620/suppl/GSM138620.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM139131 | GPL570 |
|
T1-1 (HCC stage 1-1)
|
Human Liver
|
Human
|
Tissue
|
| Sample_geo_accession | GSM139131
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Oct 07 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM139nnn/GSM139131/suppl/GSM139131.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM143545 | GPL570 |
|
T1-2 (HCC stage 1-2)
|
Human Liver
|
HCC stage 1
|
Tissue
|
| Sample_geo_accession | GSM143545
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Nov 02 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143545/suppl/GSM143545.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM143546 | GPL570 |
|
T1-3 (HCC stage 1-3)
|
Human Liver
|
HCC stage 1
|
Tissue
|
| Sample_geo_accession | GSM143546
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Nov 02 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143546/suppl/GSM143546.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM143547 | GPL570 |
|
T1-4 (HCC stage 1-4)
|
Human Liver
|
HCC stage 1
|
Tissue
|
| Sample_geo_accession | GSM143547
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Nov 02 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143547/suppl/GSM143547.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM143548 | GPL570 |
|
T3-1 (HCC stage 3-1)
|
Human Liver
|
HCC stage 3
|
Tissue
|
| Sample_geo_accession | GSM143548
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Nov 03 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143548/suppl/GSM143548.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM143549 | GPL570 |
|
T3-2 (HCC stage 3-2)
|
Human Liver
|
HCC stage 3
|
Tissue
|
| Sample_geo_accession | GSM143549
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Nov 03 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143549/suppl/GSM143549.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM143550 | GPL570 |
|
T3-3 (HCC stage 3-3)
|
Human Liver
|
HCC stage 3
|
Tissue
|
| Sample_geo_accession | GSM143550
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Nov 03 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143550/suppl/GSM143550.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM143551 | GPL570 |
|
T3-4 (HCC stage 3-4)
|
Human Liver
|
HCC stage 3
|
Tissue
|
| Sample_geo_accession | GSM143551
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Nov 03 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143551/suppl/GSM143551.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM143552 | GPL570 |
|
T3-5 (HCC stage 3-5
|
Human Liver
|
HCC stage 3
|
Tissue
|
| Sample_geo_accession | GSM143552
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Nov 03 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143552/suppl/GSM143552.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
| | |
|
GSM143553 | GPL570 |
|
T3-6 (HCC stage 3-6)
|
Human Liver
|
HCC stage 3
|
Tissue
|
| Sample_geo_accession | GSM143553
| | Sample_status | Public on Jul 11 2008
| | Sample_submission_date | Nov 03 2006
| | Sample_last_update_date | Mar 22 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was prepared by Trizol extraction
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_hyb_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_scan_protocol | see Affymetrix GeneChip Human Genome U133 Plus 2.0 Array manufacturer's web site
| | Sample_data_processing | The arrays were scanned using an Affimetrix GeneChip scanner 3000. The resulting image data was captured and converted to digital output using GeneChip Operating Software v.1.1.1. The absolute results (*.chp) from different experiments (probe arrays of the same type) that are scaled to the same target signal using the All Probe Sets scaling option (scaling factor, 500) may be directly compared. Parameter: Alpha1=0.05, Alpha2=0.065, Tau=0.015.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Ann-Ping,,Tsou
| | Sample_contact_email | aptsou@ym.edu.tw
| | Sample_contact_institute | National Yang-Ming University
| | Sample_contact_address | No. 155, Sec. 2, Li-Nong St., Beitou District
| | Sample_contact_city | Taipei
| | Sample_contact_zip/postal_code | 112
| | Sample_contact_country | Taiwan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM143nnn/GSM143553/suppl/GSM143553.CEL.gz
| | Sample_series_id | GSE6222
| | Sample_data_row_count | 54675
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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