Search results for the GEO ID: GSE6280  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM144461 | GPL96 |
|
Normal kidney, 12 weeks old fetus [HG-U133A]
|
12 weeks old normal renal tissue
|
fetal normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144461
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144461/suppl/GSM144461.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144462 | GPL96 |
|
Normal kidney, 21 weeks old fetus [HG-U133A]
|
21 weeks old normal renal tissue
|
fetal normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144462
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144462/suppl/GSM144462.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144463 | GPL96 |
|
Normal kidney, adult [HG-U133A]
|
adult normal renal tissue
|
adult normal kidney, pooled
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144463
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144463/suppl/GSM144463.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144464 | GPL96 |
|
Wilm's tumor [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144464
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144464/suppl/GSM144464.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144465 | GPL96 |
|
Clear cell sarcoma of the kidney [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144465
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144465/suppl/GSM144465.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144466 | GPL96 |
|
Pappilary renal cell tumor, pT1,G1 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144466
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144466/suppl/GSM144466.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144467 | GPL96 |
|
Pappilary renal cell tumor, pT3,G3 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144467
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144467/suppl/GSM144467.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144468 | GPL96 |
|
Conventional RCC, pooled, pT1, G1 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144468
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144468/suppl/GSM144468.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144469 | GPL96 |
|
Conventional RCC, pooled, pT3, G3 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144469
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144469/suppl/GSM144469.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144470 | GPL96 |
|
Chromophobe RCC, pooled# [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144470
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144470/suppl/GSM144470.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144471 | GPL96 |
|
Renal oncocytoma, pooled [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144471
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144471/suppl/GSM144471.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144472 | GPL96 |
|
Normal kidney, 13 weeks old fetus [HG-U133A]
|
13 weeks old normal renal tissue
|
fetal normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144472
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144472/suppl/GSM144472.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144473 | GPL96 |
|
Normal kidney, 20 weeks old fetus [HG-U133A]
|
20 weeks old normal renal tissue
|
fetal normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144473
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144473/suppl/GSM144473.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144474 | GPL96 |
|
Normal adult kidney, pooled [HG-U133A]
|
adult normal renal tissue
|
adult normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144474
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144474/suppl/GSM144474.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144475 | GPL96 |
|
ESRD kidney, HD94 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144475
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144475/suppl/GSM144475.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144476 | GPL96 |
|
ARCD kidney HD105 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144476
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144476/suppl/GSM144476.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144477 | GPL96 |
|
ARCD kidney, HD123 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144477
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144477/suppl/GSM144477.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144478 | GPL96 |
|
ARCD kidney, HD195 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144478
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144478/suppl/GSM144478.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144479 | GPL96 |
|
ARCD kidney, HD209 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144479
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144479/suppl/GSM144479.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144480 | GPL96 |
|
ESRD kidney, HD217 [HG-U133A]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144480
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL96
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144480/suppl/GSM144480.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22283
| | |
|
GSM144481 | GPL97 |
|
Normal kidney, 12 weeks old fetus [HG-U133B]
|
12 weeks old normal renal tissue
|
fetal normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144481
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144481/suppl/GSM144481.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144482 | GPL97 |
|
Normal kidney, 21 weeks old fetus [HG-U133B]
|
21 weeks old normal renal tissue
|
fetal normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144482
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144482/suppl/GSM144482.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144483 | GPL97 |
|
Normal kidney, adult [HG-U133B]
|
adult normal renal tissue
|
adult normal kidney, pooled
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144483
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144483/suppl/GSM144483.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144484 | GPL97 |
|
Wilm's tumor [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144484
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144484/suppl/GSM144484.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144485 | GPL97 |
|
Clear cell sarcoma of the kidney [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144485
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144485/suppl/GSM144485.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144486 | GPL97 |
|
Pappilary renal cell tumor, pT1,G1 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144486
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144486/suppl/GSM144486.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144487 | GPL97 |
|
Pappilary renal cell tumor, pT3,G3 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144487
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144487/suppl/GSM144487.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144488 | GPL97 |
|
Conventional RCC, pooled, pT1, G1 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144488
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144488/suppl/GSM144488.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144489 | GPL97 |
|
Conventional RCC, pooled, pT3, G3 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144489
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144489/suppl/GSM144489.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144490 | GPL97 |
|
Chromophobe RCC, pooled# [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144490
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144490/suppl/GSM144490.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144491 | GPL97 |
|
Renal oncocytoma, pooled [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144491
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144491/suppl/GSM144491.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144492 | GPL97 |
|
Normal kidney, 13 weeks old fetus [HG-U133B]
|
13 weeks old normal renal tissue
|
fetal normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144492
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144492/suppl/GSM144492.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144493 | GPL97 |
|
Normal kidney, 20 weeks old fetus [HG-U133B]
|
20 weeks old normal renal tissue
|
fetal normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144493
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144493/suppl/GSM144493.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144494 | GPL97 |
|
Normal adult kidney, pooled [HG-U133B]
|
adult normal renal tissue
|
adult normal kidney
|
Gene expression data for normal kidney
|
| Sample_geo_accession | GSM144494
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144494/suppl/GSM144494.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144495 | GPL97 |
|
ESRD kidney, HD94 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144495
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144495/suppl/GSM144495.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144496 | GPL97 |
|
ARCD kidney HD105 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144496
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144496/suppl/GSM144496.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144497 | GPL97 |
|
ARCD kidney, HD123 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144497
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144497/suppl/GSM144497.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144498 | GPL97 |
|
ARCD kidney, HD195 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144498
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144498/suppl/GSM144498.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144499 | GPL97 |
|
ARCD kidney, HD209 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144499
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144499/suppl/GSM144499.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
GSM144500 | GPL97 |
|
ESRD kidney, HD217 [HG-U133B]
|
tumor renal tissue
|
tumor kidney
|
Gene expression data for tumor kidney
|
| Sample_geo_accession | GSM144500
| | Sample_status | Public on Aug 01 2009
| | Sample_submission_date | Nov 14 2006
| | Sample_last_update_date | Aug 25 2008
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A
| | Sample_data_processing | The data were analyzed using R Bioconductor software and mas5 algorithm for data normalization and processing
| | Sample_platform_id | GPL97
| | Sample_contact_name | Dmitry,,Zubakov
| | Sample_contact_laboratory | Forensic Molecular Biology
| | Sample_contact_institute | Erasmus Medical Centre Rotterdam
| | Sample_contact_address | Dr. Molewaterplein, 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015 GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144500/suppl/GSM144500.CEL.gz
| | Sample_series_id | GSE6280
| | Sample_data_row_count | 22645
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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