Search results for the GEO ID: GSE6299  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM144733 | GPL1355 |
|
Ronghe 062205 1
|
Rat skin keratinocyte without treatment
|
Dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
An immortalized rat keratinocyte cell line,originally isolated from the dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
| Sample_geo_accession | GSM144733
| | Sample_status | Public on Nov 16 2006
| | Sample_submission_date | Nov 16 2006
| | Sample_last_update_date | Nov 16 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | No treatment
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 0.5-2ug polyA RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
| | Sample_data_processing | The data were analyzed with BRB-ArraYTools version 3.5.0-Beta-1
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ronghe,,Zhang
| | Sample_contact_email | zhangr@env.med.nyu.edu
| | Sample_contact_phone | 8457313584
| | Sample_contact_fax | 8453515472
| | Sample_contact_laboratory | Fred Burns
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 57 Old Forge Rd
| | Sample_contact_city | Tuxedo Park
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10987
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144733/suppl/GSM144733.CEL.gz
| | Sample_series_id | GSE6299
| | Sample_data_row_count | 31099
| | |
|
GSM144734 | GPL1355 |
|
Ronghe 062205 2
|
Rat skin keratinocyte without treatment
|
Dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
An immortalized rat keratinocyte cell line,originally isolated from the dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
| Sample_geo_accession | GSM144734
| | Sample_status | Public on Nov 16 2006
| | Sample_submission_date | Nov 16 2006
| | Sample_last_update_date | Nov 16 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | No treatment
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 0.5-2ug polyA RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
| | Sample_data_processing | The data were analyzed with BRB-ArraYTools version 3.5.0-Beta-1
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ronghe,,Zhang
| | Sample_contact_email | zhangr@env.med.nyu.edu
| | Sample_contact_phone | 8457313584
| | Sample_contact_fax | 8453515472
| | Sample_contact_laboratory | Fred Burns
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 57 Old Forge Rd
| | Sample_contact_city | Tuxedo Park
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10987
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144734/suppl/GSM144734.CEL.gz
| | Sample_series_id | GSE6299
| | Sample_data_row_count | 31099
| | |
|
GSM144735 | GPL1355 |
|
Ronghe 062205 3
|
Rat skin keratinocyte without treatment
|
Dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
An immortalized rat keratinocyte cell line,originally isolated from the dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
| Sample_geo_accession | GSM144735
| | Sample_status | Public on Nov 16 2006
| | Sample_submission_date | Nov 16 2006
| | Sample_last_update_date | Nov 16 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | No treatment
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 0.5-2ug polyA RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
| | Sample_data_processing | The data were analyzed with BRB-ArraYTools version 3.5.0-Beta-1
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ronghe,,Zhang
| | Sample_contact_email | zhangr@env.med.nyu.edu
| | Sample_contact_phone | 8457313584
| | Sample_contact_fax | 8453515472
| | Sample_contact_laboratory | Fred Burns
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 57 Old Forge Rd
| | Sample_contact_city | Tuxedo Park
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10987
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144735/suppl/GSM144735.CEL.gz
| | Sample_series_id | GSE6299
| | Sample_data_row_count | 31099
| | |
|
GSM144736 | GPL1355 |
|
Ronghe 062205 11
|
Rat skin keratynocyte with radiation treatment
|
Dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
An immortalized rat keratinocyte cell line,originally isolated from the dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
| Sample_geo_accession | GSM144736
| | Sample_status | Public on Nov 16 2006
| | Sample_submission_date | Nov 16 2006
| | Sample_last_update_date | Nov 16 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3Gy 56 Fe radiation treatment
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 0.5-2ug polyA RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
| | Sample_data_processing | The data were analyzed with BRB-ArraYTools version 3.5.0-Beta-1
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ronghe,,Zhang
| | Sample_contact_email | zhangr@env.med.nyu.edu
| | Sample_contact_phone | 8457313584
| | Sample_contact_fax | 8453515472
| | Sample_contact_laboratory | Fred Burns
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 57 Old Forge Rd
| | Sample_contact_city | Tuxedo Park
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10987
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144736/suppl/GSM144736.CEL.gz
| | Sample_series_id | GSE6299
| | Sample_data_row_count | 31099
| | |
|
GSM144737 | GPL1355 |
|
Ronghe 062205 12
|
Rat skin keratynocyte with radiation treatment
|
Dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
An immortalized rat keratinocyte cell line,originally isolated from the dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
| Sample_geo_accession | GSM144737
| | Sample_status | Public on Nov 16 2006
| | Sample_submission_date | Nov 16 2006
| | Sample_last_update_date | Nov 16 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3Gy 56 Fe radiation treatment
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 0.5-2ug polyA RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
| | Sample_data_processing | The data were analyzed with BRB-ArraYTools version 3.5.0-Beta-1
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ronghe,,Zhang
| | Sample_contact_email | zhangr@env.med.nyu.edu
| | Sample_contact_phone | 8457313584
| | Sample_contact_fax | 8453515472
| | Sample_contact_laboratory | Fred Burns
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 57 Old Forge Rd
| | Sample_contact_city | Tuxedo Park
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10987
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144737/suppl/GSM144737.CEL.gz
| | Sample_series_id | GSE6299
| | Sample_data_row_count | 31099
| | |
|
GSM144738 | GPL1355 |
|
Ronghe 062205 13
|
Rat skin keratynocyte with radiation treatment
|
Dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
An immortalized rat keratinocyte cell line,originally isolated from the dorsal skin of neonatal male weanling Sprague_Dawley rats(CD)
|
| Sample_geo_accession | GSM144738
| | Sample_status | Public on Nov 16 2006
| | Sample_submission_date | Nov 16 2006
| | Sample_last_update_date | Nov 16 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_treatment_protocol_ch1 | 3Gy 56 Fe radiation treatment
| | Sample_growth_protocol_ch1 | N/A
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 0.5-2ug polyA RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Rat Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
| | Sample_data_processing | The data were analyzed with BRB-ArraYTools version 3.5.0-Beta-1
| | Sample_platform_id | GPL1355
| | Sample_contact_name | Ronghe,,Zhang
| | Sample_contact_email | zhangr@env.med.nyu.edu
| | Sample_contact_phone | 8457313584
| | Sample_contact_fax | 8453515472
| | Sample_contact_laboratory | Fred Burns
| | Sample_contact_department | Environmental Medicine
| | Sample_contact_institute | New York University School of Medicine
| | Sample_contact_address | 57 Old Forge Rd
| | Sample_contact_city | Tuxedo Park
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10987
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM144nnn/GSM144738/suppl/GSM144738.CEL.gz
| | Sample_series_id | GSE6299
| | Sample_data_row_count | 31099
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
